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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.482266 (21 seq.)
>W1711361059
MDKE01000011
Gammaproteobacteria
Oceanisphaera psychrotolerans [MDKE]
364775
364850
+
Thr
TGT
[ENA]
¡û
>W131180092
ARMW01000023
Gammaproteobacteria
Oceanimonas smirnovii ATCC BAA-899 [ARMW]
72072
71997
-
Thr
TGT
[ENA]
¡û
>W1711572505
MNBX01000190
Gammaproteobacteria
Sodalis sp. TME1 [MNBX]
14311
14236
-
Thr
TGT
[ENA]
¡û
>WENV170016089
AZIJ01012401
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
730
655
-
Thr
TGT
[ENA]
¢þ
>C181012383
CP012621
Gammaproteobacteria
Zobellella denitrificans F13-1 [CP012621]
262483
262558
+
Thr
TGT
-
¡û
>C181012441
CP012621
Gammaproteobacteria
Zobellella denitrificans F13-1 [CP012621]
3445360
3445435
+
Thr
TGT
-
¡û
>W1910282517
FRDB01000295
Gammaproteobacteria
Candidatus Sodalis sp. SoCistrobi [FRDB]
945
870
-
Thr
TGT
[ENA]
¡û
>W1910852645
NBIM01000011
Gammaproteobacteria
Oceanimonas doudoroffii ATCC 27123 [NBIM]
51185
51260
+
Thr
TGT
[ENA]
¡û
>W1911075398
NMUO01000049
Gammaproteobacteria
Zobellella denitrificans ZD1 [NMUO]
27122
27197
+
Thr
TGT
[ENA]
¡û
>W1911075406
NMUO01000054
Gammaproteobacteria
Zobellella denitrificans ZD1 [NMUO]
19831
19756
-
Thr
TGT
[ENA]
¡û
>W1911174195
NQJF01000019
Gammaproteobacteria
Oceanimonas baumannii ATCC 700832 [NQJF]
47514
47589
+
Thr
TGT
[ENA]
¡û
>W1810390117
PXYG01000002
Gammaproteobacteria
Zobellella endophytica 59N8 [PXYG]
690740
690815
+
Thr
TGT
[ENA]
¡û
>W1810390163
PXYG01000010
Gammaproteobacteria
Zobellella endophytica 59N8 [PXYG]
42778
42853
+
Thr
TGT
[ENA]
¡û
>W1810390220
PXYH01000012
Gammaproteobacteria
Zobellella taiwanensis JCM 13381 [PXYH]
71716
71641
-
Thr
TGT
[ENA]
¡û
>W1810390230
PXYH01000017
Gammaproteobacteria
Zobellella taiwanensis JCM 13381 [PXYH]
34006
33931
-
Thr
TGT
[ENA]
¡û
>W1810471877
QAGM01000012
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
70139
70064
-
Thr
TGT
[ENA]
¡û
>W1810533087
QCZE01000003
Gammaproteobacteria
Zobellella maritima 102-Py4 [QCZE]
177625
177700
+
Thr
TGT
[ENA]
¡û
>W1810533098
QCZE01000007
Gammaproteobacteria
Zobellella maritima 102-Py4 [QCZE]
69293
69218
-
Thr
TGT
[ENA]
¡û
>C151009206
CP006568
Gammaproteobacteria
Candidatus Sodalis pierantonius str. SOPE [CP006568]
3903688
3903613
-
Thr
TGT
[Ensembl]
¡û
>C151009269
CP006569
Gammaproteobacteria
Sodalis praecaptivus HS1 [CP006569]
4521768
4521693
-
Thr
TGT
[Ensembl]
¡û
>C121007311
CP003171
Gammaproteobacteria
Oceanimonas sp. GK1 [CP003171]
783306
783381
+
Thr
TGT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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