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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.482311 (33 seq.)
>W1710990957
LPXH01000035
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
187455
187380
-
Glu
TTC
[ENA]
¡û
>W1710990978
LPXH01000036
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
208
133
-
Glu
TTC
[ENA]
¡û
>W1711628344
MPOE01000003
Betaproteobacteria
Comamonas kerstersii 202149 [MPOE]
93
18
-
Glu
TTC
[ENA]
¡û
>W1711628364
MPOE01000008
Betaproteobacteria
Comamonas kerstersii 202149 [MPOE]
221025
220950
-
Glu
TTC
[ENA]
¡û
>W1711628451
MPOF01000013
Betaproteobacteria
Comamonas kerstersii 121606 [MPOF]
128370
128295
-
Glu
TTC
[ENA]
¡û
>W1711628453
MPOF01000013
Betaproteobacteria
Comamonas kerstersii 121606 [MPOF]
128070
127995
-
Glu
TTC
[ENA]
¡û
>C171104864
CP020121
Betaproteobacteria
Comamonas kerstersii 8943 [CP020121]
3455225
3455150
-
Glu
TTC
-
¡û
>C171104866
CP020121
Betaproteobacteria
Comamonas kerstersii 8943 [CP020121]
3454925
3454850
-
Glu
TTC
-
¡û
>C171104868
CP020121
Betaproteobacteria
Comamonas kerstersii 8943 [CP020121]
3454621
3454546
-
Glu
TTC
-
¡û
>C171104871
CP020121
Betaproteobacteria
Comamonas kerstersii 8943 [CP020121]
3454286
3454211
-
Glu
TTC
-
¡û
>C171104874
CP020121
Betaproteobacteria
Comamonas kerstersii 8943 [CP020121]
3453951
3453876
-
Glu
TTC
-
¡û
>WENV180402712
OBRQ01014948
[OBRQ] human gut metagenome; ENVO:feces
248
173
-
Glu
TTC
[ENA]
¢þ
>WENV170654587
JRYL01001062
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
26349
26274
-
Glu
TTC
[ENA]
¢þ
>C181158476
CP027667
Betaproteobacteria
Melaminivora suipulveris SC2-9 [CP027667]
3311548
3311623
+
Glu
TTC
-
¡û
>W1911244746
NSJB01000012
Betaproteobacteria
Vandammella animalimorsus NML00-0135 [NSJB]
35130
35055
-
Glu
TTC
[ENA]
¡û
>W1911244796
NSJC01000035
Betaproteobacteria
Vandammella animalimorsus NML97-0112 [NSJC]
16233
16308
+
Glu
TTC
[ENA]
¡û
>W1911244816
NSJD01000004
Betaproteobacteria
Vandammella animalimorsus NML79-0751 [NSJD]
166621
166696
+
Glu
TTC
[ENA]
¡û
>W1911244879
NSJE01000015
Betaproteobacteria
Vandammella animalimorsus NML120219 [NSJE]
75905
75980
+
Glu
TTC
[ENA]
¡û
>W1911244897
NSJF01000001
Betaproteobacteria
Vandammella animalimorsus NML03-0146 [NSJF]
154070
154145
+
Glu
TTC
[ENA]
¡û
>W1911270453
NTBH01000001
Betaproteobacteria
Vandammella animalimorsus NML91-0036 [NTBH]
847463
847388
-
Glu
TTC
[ENA]
¡û
>W1911270498
NTBI01000001
Betaproteobacteria
Vandammella animalimorsus NML91-0035 [NTBI]
501534
501459
-
Glu
TTC
[ENA]
¡û
>W1810609617
QGUB01000001
Betaproteobacteria
Melaminivora alkalimesophila DSM 26006 [QGUB]
557892
557967
+
Glu
TTC
[ENA]
¡û
>W1810609620
QGUB01000001
Betaproteobacteria
Melaminivora alkalimesophila DSM 26006 [QGUB]
558211
558286
+
Glu
TTC
[ENA]
¡û
>W1511596000
LBNQ01000011
Betaproteobacteria
Lampropedia cohaerens CT6 [LBNQ]
27810
27735
-
Glu
TTC
[ENA]
¡û
>W1511596026
LBNQ01000033
Betaproteobacteria
Lampropedia cohaerens CT6 [LBNQ]
226485
226560
+
Glu
TTC
[ENA]
¡û
>WENV056514
AACY023258616
Marine microbial communities from Global Ocean Sampling (GOS)
1698
1621
-
Glu
TTC
[ENA]
>W121108893
ALEE01000010
Betaproteobacteria
Melaminivora alkalimesophila CRZ1 [ALEE]
202
127
-
Glu
TTC
[ENA]
¡û
>W1610609957
LFYP01000025
Betaproteobacteria
Comamonas kerstersii [LFYP]
117
192
+
Glu
TTC
[ENA]
¡û
>W1610845629
LPXH01000035
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
187455
187380
-
Glu
TTC
[ENA]
¡û
>W1610845650
LPXH01000036
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
208
133
-
Glu
TTC
[ENA]
¡û
>W1710583664
FQUZ01000010
Betaproteobacteria
Lampropedia hyalina DSM 16112 [FQUZ]
23331
23256
-
Glu
TTC
[ENA]
¡û
>W1710583682
FQUZ01000028
Betaproteobacteria
Lampropedia hyalina DSM 16112 [FQUZ]
5244
5319
+
Glu
TTC
[ENA]
¡û
>W1710731302
LFYP01000025
Betaproteobacteria
Comamonas kerstersii [LFYP]
117
192
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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