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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.482403 (37 seq.)
>W1711081246
LSSA01000326
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
2104
2034
-
Cys
GCA
[ENA]
¡û
>W1711584850
MNYZ01000026
Cyanobacteriota
Oscillatoriales cyanobacterium CG2_30_40_61 [MNYZ]
5162
5092
-
Cys
GCA
[ENA]
¡û
>w002281
AAAY02000033
Cyanobacteriota
Nostoc punctiforme [AAAY]
86468
86541
+
Cys
GCA
[ENA]
¡û
>W141038198
ALVI01000059
Cyanobacteriota
Kamptonema formosum PCC 6407 [ALVI]
111671
111741
+
Cys
GCA
[ENA]
¡û
>W141096951
AVFZ01000041
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 98 [AVFZ]
67410
67480
+
Cys
GCA
[ENA]
¡û
>WENV181289275
OFGZ01031146
[OFGZ] mouse gut metagenome; faeces
90
163
+
Cys
GCA
[ENA]
¢þ
>WENV181301219
OFHN01060113
[OFHN] mouse gut metagenome; faeces
23
96
+
Cys
GCA
[ENA]
¢þ
>C08006896
CP001037
Cyanobacteriota
Nostoc punctiforme PCC 73102 ATCC 29133; PCC 73102 [CP001037]
878994
879064
+
Cys
GCA
[Ensembl]
¡û
>WENV170002243
AGSF01001095
[AGSF] microbial mat metagenome; purple microbial (photo and chemo synthetic) mats found in low oxygen high sulfur sink holes
5571
5641
+
Cys
GCA
[ENA]
¢þ
>WENV170002256
AGSF01001548
[AGSF] microbial mat metagenome; purple microbial (photo and chemo synthetic) mats found in low oxygen high sulfur sink holes
4267
4337
+
Cys
GCA
[ENA]
¢þ
>WENV170002323
AGSF01012932
[AGSF] microbial mat metagenome; purple microbial (photo and chemo synthetic) mats found in low oxygen high sulfur sink holes
171
101
-
Cys
GCA
[ENA]
¢þ
>WENV170640272
JFJP01015666
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
4448
4378
-
Cys
GCA
[ENA]
¢þ
>WENV170954294
MJUF01013220
[MJUF] soil metagenome; viral particles from soil sample MG6
334
264
-
Cys
GCA
[ENA]
¢þ
>WENV170996501
MWWF01297842
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
155
85
-
Cys
GCA
[ENA]
¢þ
>WENV171003076
NNBT01000110
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
4486
4556
+
Cys
GCA
[ENA]
¢þ
>WENV171003466
NNBU01000034
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
5679
5609
-
Cys
GCA
[ENA]
¢þ
>WENV171003678
NNBV01000053
[NNBV] plant metagenome; symbiotic tissue sample KVS11
22008
22081
+
Cys
GCA
[ENA]
¢þ
>C181137732
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
4904384
4904454
+
Cys
GCA
-
¡û
>C181137797
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
1207936
1208006
+
Cys
GCA
-
¡û
>C191083054
CP031941
Cyanobacteriota
Nostoc sphaeroides Kutzing En [CP031941]
6158090
6158160
+
Cys
GCA
-
¡û
>W1910018079
BDQK01000016
Cyanobacteriota
Aphanothece sacrum FPU1 [BDQK]
284620
284691
+
Cys
GCA
[ENA]
¡û
>W1910018095
BDQL01000011
Cyanobacteriota
Aphanothece sacrum FPU3 [BDQL]
122337
122408
+
Cys
GCA
[ENA]
¡û
>W1910020544
BDUD01000001
Cyanobacteriota
Nostoc commune NIES-4072 [BDUD]
684322
684252
-
Cys
GCA
[ENA]
¡û
>W1910194136
CZCS01000007
Cyanobacteriota
Planktothrix paucivesiculata PCC 9631 [CZCS]
141760
141690
-
Cys
GCA
[ENA]
¡û
>W1910194213
CZCT02000130
Cyanobacteriota
Planktothrix sp. PCC 11201 [CZCT]
567985
568055
+
Cys
GCA
[ENA]
¡û
>W1910646654
LWSY01000111
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
101681
101751
+
Cys
GCA
[ENA]
¡û
>W1911118665
NOLI01000087
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 213 [NOLI]
274
204
-
Cys
GCA
[ENA]
¡û
>W1911118760
NOLJ01000010
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
177498
177428
-
Cys
GCA
[ENA]
¡û
>W1911118811
NOLK01000028
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
12132
12202
+
Cys
GCA
[ENA]
¡û
>W1911244282
NSHF01000359
Cyanobacteriota
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 [NSHF]
247
177
-
Cys
GCA
[ENA]
¡û
>W1911426117
NXIB02000101
Cyanobacteriota
Tychonema bourrellyi FEM_GT703 [NXIB]
13994
13924
-
Cys
GCA
[ENA]
¡û
>W1810366322
PVWH01000597
Cyanobacteriota
filamentous cyanobacterium Phorm 46 [PVWH]
764
694
-
Cys
GCA
[ENA]
¡û
>W1810366332
PVWI01000019
Cyanobacteriota
filamentous cyanobacterium Phorm 6 [PVWI]
3737
3807
+
Cys
GCA
[ENA]
¡û
>W10128281
CACA01000200
Cyanobacteriota
Kamptonema sp. PCC 6506 PCC 6506 [CACA]
3553
3623
+
Cys
GCA
[ENA]
¡û
>W11164194
AFJC01000001
Cyanobacteriota
Microcoleus vaginatus FGP-2 [AFJC]
945423
945493
+
Cys
GCA
[ENA]
¡û
>W11185251
CACA01000200
Cyanobacteriota
Kamptonema sp. PCC 6506 PCC 6506 [CACA]
3553
3623
+
Cys
GCA
[ENA]
¡û
>C131004782
CP003614
Cyanobacteriota
Oscillatoria nigro-viridis PCC 7112 [CP003614]
5638227
5638157
-
Cys
GCA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK