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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.482436 (46 seq.)
>W1710863840
LMFL01000008
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
67572
67497
-
Thr
TGT
[ENA]
¡û
>W1710863859
LMFL01000024
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
16611
16536
-
Thr
TGT
[ENA]
¡û
>W1710865560
LMGT01000009
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
117107
117032
-
Thr
TGT
[ENA]
¡û
>W1710871127
LMLB01000001
Alphaproteobacteria
Sphingomonas sp. Leaf33 [LMLB]
2204243
2204318
+
Thr
TGT
[ENA]
¡û
>W1710873853
LMNC01000006
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
190824
190749
-
Thr
TGT
[ENA]
¡û
>W1710876114
LMOY01000010
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
59610
59535
-
Thr
TGT
[ENA]
¡û
>C171094857
CP019508
Alphaproteobacteria
Brevundimonas sp. LM2 [CP019508]
2385821
2385896
+
Thr
TGT
-
¡û
>C171095088
CP019511
Alphaproteobacteria
Sphingomonas sp. LM7 [CP019511]
184454
184379
-
Thr
TGT
-
¡û
>W131052430
AMYY01000011
Alphaproteobacteria
alpha proteobacterium L41A [AMYY]
64515
64590
+
Thr
TGT
[ENA]
¡û
>WENV180391278
OBPM01069902
[OBPM] marine metagenome; ENVO:00002010
171
96
-
Thr
TGT
[ENA]
¢þ
>WENV181384311
OFRI01000103
[OFRI] wastewater metagenome; Exp Tend VB 90WW
21145
21070
-
Thr
TGT
[ENA]
¢þ
>WENV181384794
OFRI01010938
[OFRI] wastewater metagenome; Exp Tend VB 90WW
76
1
-
Thr
TGT
[ENA]
¢þ
>WENV181385047
OFRI01028929
[OFRI] wastewater metagenome; Exp Tend VB 90WW
76
1
-
Thr
TGT
[ENA]
¢þ
>WENV170577558
FSSH01000179
[FSSH] freshwater metagenome; drinking water
37244
37169
-
Thr
TGT
[ENA]
¢þ
>WENV170658937
JUGB01000709
[JUGB] scorpion gut metagenome; ten pooled guts of food-deprived Vaejovis mexicanus smith and Centruroides limpidus
2321
2246
-
Thr
TGT
[ENA]
¢þ
>WENV170711527
LNFM01005692
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
16189
16114
-
Thr
TGT
[ENA]
¢þ
>WENV170712438
LNFM01013341
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
9212
9287
+
Thr
TGT
[ENA]
¢þ
>WENV170784062
MCHG01000005
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
268477
268552
+
Thr
TGT
[ENA]
¢þ
>C181056253
CP022048
Alphaproteobacteria
Brevundimonas vesicularis FDAARGOS_289 [CP022048]
2910858
2910783
-
Thr
TGT
-
¡û
>C191154749
CP037913
Alphaproteobacteria
Sphingomonas sp. AAP5 [CP037913]
1992907
1992982
+
Thr
TGT
-
¡û
>C191166132
CP039435
Alphaproteobacteria
Brevundimonas sp. SGAir0440 [CP039435]
1691720
1691645
-
Thr
TGT
-
¡û
>W1911566735
PCPB01000001
Alphaproteobacteria
Brevundimonas sp. MYb52 [PCPB]
56060
55985
-
Thr
TGT
[ENA]
¡û
>W1911566944
PCPF01000001
Alphaproteobacteria
Brevundimonas sp. MYb46 [PCPF]
56060
55985
-
Thr
TGT
[ENA]
¡û
>W1911567222
PCPK01000039
Alphaproteobacteria
Brevundimonas sp. MYb33 [PCPK]
5438
5363
-
Thr
TGT
[ENA]
¡û
>W1911567310
PCPM01000033
Alphaproteobacteria
Brevundimonas sp. MYb31 [PCPM]
5290
5215
-
Thr
TGT
[ENA]
¡û
>W1911567414
PCPO01000038
Alphaproteobacteria
Brevundimonas sp. MYb27 [PCPO]
23357
23432
+
Thr
TGT
[ENA]
¡û
>W1810693149
QLLC01000005
Alphaproteobacteria
Brevundimonas bullata HAMBI_262 [QLLC]
101021
101096
+
Thr
TGT
[ENA]
¡û
>SRA1014816
SRR023845.325393
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
33
108
+
Thr
TGT
[SRA]
>W10109865
ADBM01000018
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
31860
31785
-
Thr
TGT
[ENA]
¡û
>C10102225
CP002102
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [CP002102]
1483314
1483239
-
Thr
TGT
[Ensembl]
¡û
>W11112302
ADBM01000018
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
31860
31785
-
Thr
TGT
[ENA]
¡û
>W1511489480
JWSY01000023
Alphaproteobacteria
Brevundimonas nasdae TPW30 [JWSY]
30806
30731
-
Thr
TGT
[ENA]
¡û
>W1511547893
JZRG01000021
Alphaproteobacteria
Brevundimonas sp. KM4 [JZRG]
53473
53398
-
Thr
TGT
[ENA]
¡û
>C161089104
CP015511
Alphaproteobacteria
Brevundimonas sp. GW460-12-10-14-LB2 [CP015511]
1550310
1550385
+
Thr
TGT
[Ensembl]
¡û
>W1610074202
BCWM01000001
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
77910
77985
+
Thr
TGT
[ENA]
¡û
>W121033229
AHIR01000008
Alphaproteobacteria
Sphingomonas echinoides ATCC 14820 [AHIR]
178437
178512
+
Thr
TGT
[ENA]
¡û
>W121033295
AHIS01000099
Alphaproteobacteria
Sphingomonas sp. PAMC 26605 [AHIS]
3824
3899
+
Thr
TGT
[ENA]
¡û
>W1610726186
LMFL01000008
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
67572
67497
-
Thr
TGT
[ENA]
¡û
>W1610726205
LMFL01000024
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
16611
16536
-
Thr
TGT
[ENA]
¡û
>W1610727906
LMGT01000009
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
117107
117032
-
Thr
TGT
[ENA]
¡û
>W1610733473
LMLB01000001
Alphaproteobacteria
Sphingomonas sp. Leaf33 [LMLB]
2204243
2204318
+
Thr
TGT
[ENA]
¡û
>W1610736199
LMNC01000006
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
190824
190749
-
Thr
TGT
[ENA]
¡û
>W1610738460
LMOY01000010
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
59610
59535
-
Thr
TGT
[ENA]
¡û
>W1710071320
BCWM01000001
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
77910
77985
+
Thr
TGT
[ENA]
¡û
>W1710084609
BDMM01000001
Alphaproteobacteria
Brevundimonas sp. SH203 [BDMM]
464165
464240
+
Thr
TGT
[ENA]
¡û
>W1710527022
FNKT01000001
Alphaproteobacteria
Brevundimonas sp. 374 [FNKT]
808622
808697
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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