This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.482441 (96 seq.)
>W1711048687
LRPW01000051
Bacillota
Finegoldia magna [LRPW]
53724
53651
-
Gly
TCC
[ENA]
¡û
>W1711066821
LSDF01000032
Bacillota
Parvimonas sp. KA00067 [LSDF]
45711
45784
+
Gly
TCC
[ENA]
¡û
>W1711094618
LTGC01000044
Bacillota
Peptoniphilus sp. HMSC062D09 [LTGC]
636
709
+
Gly
TCC
[ENA]
¡û
>W1711503265
MKTL01000004
Bacillota
Clostridiales bacterium 38-18 [MKTL]
128052
127979
-
Gly
TCC
[ENA]
¡û
>W1711503280
MKTL01000024
Bacillota
Clostridiales bacterium 38-18 [MKTL]
185858
185785
-
Gly
TCC
[ENA]
¡û
>C171130350
LT635772
Bacillota
Anaerococcus mediterraneensis Marseille-P2765 [LT635772]
2078701
2078628
-
Gly
TCC
-
¡û
>WENV180193143
OAZW01000153
[OAZW] human gut metagenome; faeces
99324
99251
-
Gly
TCC
[ENA]
¢þ
>WENV180285841
OBID01752296
[OBID] metagenome; sludge
145
218
+
Gly
TCC
[ENA]
¢þ
>WENV180312552
OBJZ01000004
[OBJZ] human gut metagenome; fecal sample
534114
534041
-
Gly
TCC
[ENA]
¢þ
>WENV180312634
OBJZ01000021
[OBJZ] human gut metagenome; fecal sample
2
75
+
Gly
TCC
[ENA]
¢þ
>WENV180312758
OBJZ01000066
[OBJZ] human gut metagenome; fecal sample
1521
1594
+
Gly
TCC
[ENA]
¢þ
>WENV180346061
OBLN01022644
[OBLN] sediment metagenome; sediment
75
2
-
Gly
TCC
[ENA]
¢þ
>WENV180402436
OBRP01000916
[OBRP] human gut metagenome; ENVO:feces
1784
1711
-
Gly
TCC
[ENA]
¢þ
>WENV180402658
OBRQ01002906
[OBRQ] human gut metagenome; ENVO:feces
797
724
-
Gly
TCC
[ENA]
¢þ
>WENV180559529
OCKC01002074
[OCKC] human gut metagenome; Infant 2 DOL 26 gut
293
220
-
Gly
TCC
[ENA]
¢þ
>WENV180566416
OCLI01010821
[OCLI] human gut metagenome; human gut
79
152
+
Gly
TCC
[ENA]
¢þ
>WENV180711787
ODFR01000003
[ODFR] human metagenome; G_DNA_R_Retroauricular crease
205
278
+
Gly
TCC
[ENA]
¢þ
>WENV180711844
ODFR01000105
[ODFR] human metagenome; G_DNA_R_Retroauricular crease
27759
27686
-
Gly
TCC
[ENA]
¢þ
>WENV180728652
ODGU01075114
[ODGU] human metagenome; G_DNA_Supragingival plaque
469
542
+
Gly
TCC
[ENA]
¢þ
>WENV180734866
ODGZ01029965
[ODGZ] human metagenome; G_DNA_Supragingival plaque
855
928
+
Gly
TCC
[ENA]
¢þ
>WENV180838985
ODKH01008248
[ODKH] human metagenome; G_DNA_Anterior nares
232
159
-
Gly
TCC
[ENA]
¢þ
>WENV180853100
ODKW01029339
[ODKW] human metagenome; G_DNA_Tongue dorsum
202
275
+
Gly
TCC
[ENA]
¢þ
>WENV180858273
ODLC01002633
[ODLC] human metagenome; G_DNA_Tongue dorsum
3028
2955
-
Gly
TCC
[ENA]
¢þ
>WENV180916343
ODTC01012532
[ODTC] human metagenome; G_DNA_Anterior nares
127
200
+
Gly
TCC
[ENA]
¢þ
>WENV180947880
ODUG01000074
[ODUG] human metagenome; G_DNA_Tongue dorsum
7466
7393
-
Gly
TCC
[ENA]
¢þ
>WENV180951651
ODUH01038922
[ODUH] human metagenome; G_DNA_Subgingival plaque
201
274
+
Gly
TCC
[ENA]
¢þ
>WENV180953890
ODUJ01000027
[ODUJ] human metagenome; G_DNA_Tongue dorsum
68455
68382
-
Gly
TCC
[ENA]
¢þ
>WENV180966834
ODUS01000002
[ODUS] human metagenome; G_DNA_L_Retroauricular crease
1405
1478
+
Gly
TCC
[ENA]
¢þ
>WENV180966848
ODUS01000003
[ODUS] human metagenome; G_DNA_L_Retroauricular crease
5273
5346
+
Gly
TCC
[ENA]
¢þ
>WENV181000344
ODVU01008791
[ODVU] human metagenome; G_DNA_Anterior nares
21
94
+
Gly
TCC
[ENA]
¢þ
>WENV181052099
ODYE01020455
[ODYE] human metagenome; G_DNA_Tongue dorsum
326
253
-
Gly
TCC
[ENA]
¢þ
>WENV181074715
OEAO01022348
[OEAO] human metagenome; G_DNA_Tongue dorsum
1280
1207
-
Gly
TCC
[ENA]
¢þ
>WENV181158907
OEIH01015974
[OEIH] human metagenome; G_DNA_Supragingival plaque
209
136
-
Gly
TCC
[ENA]
¢þ
>W141145910
AWVB01000024
Bacillota
Peptostreptococcaceae bacterium oral taxon 113 oral taxon 113 str. W5053 [AWVB]
865
938
+
Gly
TCC
[ENA]
¡û
>WENV181804076
OGSE01000215
[OGSE] human gut metagenome; fecal sample 3 from infant 2
26002
25929
-
Gly
TCC
[ENA]
¢þ
>WENV181804167
OGSE01002536
[OGSE] human gut metagenome; fecal sample 3 from infant 2
79
6
-
Gly
TCC
[ENA]
¢þ
>WENV181976042
OHAD01000184
[OHAD] human gut metagenome; faeces
3303
3376
+
Gly
TCC
[ENA]
¢þ
>W141241031
CAGX01000077
Bacillota
Peptoniphilus grossensis ph5 [CAGX]
574
501
-
Gly
TCC
[ENA]
¡û
>W141243522
CAJO01000114
Bacillota
Casaltella massiliensis 9400853 [CAJO]
980
907
-
Gly
TCC
[ENA]
¡û
>WENV182642053
OJLL01000339
[OJLL] metagenome; surface
5153
5226
+
Gly
TCC
[ENA]
¢þ
>WENV182643163
OJLS01002582
[OJLS] metagenome; surface
1235
1162
-
Gly
TCC
[ENA]
¢þ
>WENV182645626
OJLZ01000152
[OJLZ] metagenome; surface
13029
13102
+
Gly
TCC
[ENA]
¢þ
>WENV182646664
OJMC01002909
[OJMC] metagenome; surface
1048
975
-
Gly
TCC
[ENA]
¢þ
>W141265095
CCEZ01000043
Bacillota
Anaerosalibacter massiliensis ND1 [CCEZ]
526674
526601
-
Gly
TCC
[ENA]
¡û
>W141265113
CCEZ01000076
Bacillota
Anaerosalibacter massiliensis ND1 [CCEZ]
10948
10875
-
Gly
TCC
[ENA]
¡û
>WENV182811694
OJXL01003998
[OJXL] human gut metagenome; human gut
199
272
+
Gly
TCC
[ENA]
¢þ
>WENV182815094
OJYO01001807
[OJYO] human gut metagenome; human gut
758
685
-
Gly
TCC
[ENA]
¢þ
>WENV182815369
OJYQ01003613
[OJYQ] human gut metagenome; human gut
214
141
-
Gly
TCC
[ENA]
¢þ
>WENV182842722
OKIF01002250
[OKIF] human gut metagenome; human gut
355
428
+
Gly
TCC
[ENA]
¢þ
>WENV183090762
OLKE01002086
[OLKE] metagenome; surface
1004
931
-
Gly
TCC
[ENA]
¢þ
>WENV183162098
OLOV01050996
[OLOV] human gut metagenome; faeces
92
19
-
Gly
TCC
[ENA]
¢þ
>WENV183707271
PDWI01007722
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
12825
12898
+
Gly
TCC
[ENA]
¢þ
>WENV183710189
PDWI01041406
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3770
3843
+
Gly
TCC
[ENA]
¢þ
>WENV183718775
PDWJ01006522
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
5728
5801
+
Gly
TCC
[ENA]
¢þ
>WENV183719869
PDWJ01021861
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1373
1446
+
Gly
TCC
[ENA]
¢þ
>WENV170562965
CZCB01008152
[CZCB] anaerobic digester metagenome; anaerobic digester
239
312
+
Gly
TCC
[ENA]
¢þ
>C191211278
LR134472
Bacillota
Parvimonas micra NCTC11808 [LR134472]
494349
494276
-
Gly
TCC
-
¡û
>C191213946
LR134523
Bacillota
Peptoniphilus ivorii NCTC13079 [LR134523]
458519
458592
+
Gly
TCC
-
¡û
>W09108234
ABTC01000002
Bacillota
Anaerococcus prevotii DSM 20548 [ABTC]
112177
112250
+
Gly
TCC
[ENA]
¡û
>W09108255
ABTC01000006
Bacillota
Anaerococcus prevotii DSM 20548 [ABTC]
151796
151723
-
Gly
TCC
[ENA]
¡û
>W1910211435
FMDO01000022
Bacillota
Proteiniborus sp. DW1 [FMDO]
105
178
+
Gly
TCC
[ENA]
¡û
>W1910211440
FMDO01000023
Bacillota
Proteiniborus sp. DW1 [FMDO]
12
85
+
Gly
TCC
[ENA]
¡û
>W1910237775
FPLH01000013
Bacillota
Urinicoccus massiliensis FC2 [FPLH]
142764
142837
+
Gly
TCC
[ENA]
¡û
>W1910237783
FPLH01000013
Bacillota
Urinicoccus massiliensis FC2 [FPLH]
194386
194459
+
Gly
TCC
[ENA]
¡û
>W1910874026
NDYA01000011
Bacillota
Finegoldia magna T160124 [NDYA]
1168
1241
+
Gly
TCC
[ENA]
¡û
>W1910874156
NDYD01000012
Bacillota
Finegoldia magna 12T306 [NDYD]
458
531
+
Gly
TCC
[ENA]
¡û
>W1910874353
NDYI01000009
Bacillota
Finegoldia magna 08T492 [NDYI]
263
336
+
Gly
TCC
[ENA]
¡û
>W1910874388
NDYJ01000013
Bacillota
Finegoldia magna 07T609 [NDYJ]
162
235
+
Gly
TCC
[ENA]
¡û
>W1911498550
OCTU01000005
Bacillota
Urinicoccus timonensis Marseille-P3926 [OCTU]
165897
165824
-
Gly
TCC
[ENA]
¡û
>W1911498557
OCTU01000007
Bacillota
Urinicoccus timonensis Marseille-P3926 [OCTU]
35781
35708
-
Gly
TCC
[ENA]
¡û
>W1911597017
PNHP01000008
Bacillota
Anaerococcus hydrogenalis UMB0204 [PNHP]
1181
1254
+
Gly
TCC
[ENA]
¡û
>W1810186189
PKGS01000003
Bacillota
Anaerococcus octavius UMB0119 [PKGS]
201072
200999
-
Gly
TCC
[ENA]
¡û
>W1810186213
PKGS01000009
Bacillota
Anaerococcus octavius UMB0119 [PKGS]
40217
40144
-
Gly
TCC
[ENA]
¡û
>W10126973
AEDP01000018
Bacillota
Finegoldia magna BVS033A4 [AEDP]
181072
180999
-
Gly
TCC
[ENA]
¡û
>C10101155
CP001708
Bacillota
Anaerococcus prevotii DSM 20548 [CP001708]
242137
242210
+
Gly
TCC
[Ensembl]
¡û
>C10101184
CP001708
Bacillota
Anaerococcus prevotii DSM 20548 [CP001708]
1425802
1425729
-
Gly
TCC
[Ensembl]
¡û
>W1510725093
CXYU01000015
Bacillota
Clostridiales bacterium mt11 [CXYU]
531
604
+
Gly
TCC
[ENA]
¡û
>W1510725118
CXYU01000021
Bacillota
Clostridiales bacterium mt11 [CXYU]
39220
39147
-
Gly
TCC
[ENA]
¡û
>W1511351192
JRMZ01000044
Bacillota
Tissierellia bacterium S5-A11 S5-A11 [JRMZ]
4858
4785
-
Gly
TCC
[ENA]
¡û
>W11134234
AEDP01000018
Bacillota
Finegoldia magna BVS033A4 [AEDP]
181072
180999
-
Gly
TCC
[ENA]
¡û
>W11141226
AENP01000024
Bacillota
Peptoniphilus harei ACS-146-V-Sch2b [AENP]
22132
22059
-
Gly
TCC
[ENA]
¡û
>W11173994
AFUH01000001
Bacillota
Peptoniphilus sp. oral taxon 375 oral taxon 375 str. F0436 [AFUH]
1822234
1822161
-
Gly
TCC
[ENA]
¡û
>W11174002
AFUH01000001
Bacillota
Peptoniphilus sp. oral taxon 375 oral taxon 375 str. F0436 [AFUH]
1768493
1768420
-
Gly
TCC
[ENA]
¡û
>W1610095137
CYUJ01000002
Bacillota
Neofamilia massiliensis SIT13 [CYUJ]
313089
313162
+
Gly
TCC
[ENA]
¡û
>W1610095170
CYUK01000003
Bacillota
Clostridiales bacterium SIT11 [CYUK]
1284
1357
+
Gly
TCC
[ENA]
¡û
>W1610095178
CYUK01000003
Bacillota
Clostridiales bacterium SIT11 [CYUK]
60278
60351
+
Gly
TCC
[ENA]
¡û
>W1610095375
CYUO01000004
Bacillota
Lagierella massiliensis SIT14 [CYUO]
466456
466529
+
Gly
TCC
[ENA]
¡û
>W1610889816
LRPW01000051
Bacillota
Finegoldia magna [LRPW]
53724
53651
-
Gly
TCC
[ENA]
¡û
>W1610907391
LSDF01000032
Bacillota
Parvimonas sp. KA00067 [LSDF]
45711
45784
+
Gly
TCC
[ENA]
¡û
>W1710082582
BDHH01000007
Bacillota
Fusibacter sp. 3D3 [BDHH]
1570
1643
+
Gly
TCC
[ENA]
¡û
>W1710097932
CYUJ01000002
Bacillota
Neofamilia massiliensis SIT13 [CYUJ]
313089
313162
+
Gly
TCC
[ENA]
¡û
>W1710097965
CYUK01000003
Bacillota
Clostridiales bacterium SIT11 [CYUK]
1284
1357
+
Gly
TCC
[ENA]
¡û
>W1710097973
CYUK01000003
Bacillota
Clostridiales bacterium SIT11 [CYUK]
60278
60351
+
Gly
TCC
[ENA]
¡û
>W1710098170
CYUO01000004
Bacillota
Lagierella massiliensis SIT14 [CYUO]
466456
466529
+
Gly
TCC
[ENA]
¡û
>W1710528467
FNNG01000002
Bacillota
Tepidimicrobium xylanilyticum [FNNG]
406013
405940
-
Gly
TCC
[ENA]
¡û
>W1710528502
FNNG01000016
Bacillota
Tepidimicrobium xylanilyticum [FNNG]
932
1005
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK