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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.482469 (57 seq.)
>W131059223
ANGF01000028
Bacteroidota
Riemerella anatipestifer RA-SG [ANGF]
6084
6011
-
Cys
GCA
[ENA]
¡û
>W1711117584
LUDG01000010
Bacteroidota
Riemerella anatipestifer [LUDG]
39825
39898
+
Cys
GCA
[ENA]
¡û
>W1711117620
LUDH01000009
Bacteroidota
Riemerella anatipestifer [LUDH]
41015
41088
+
Cys
GCA
[ENA]
¡û
>W1711117650
LUDI01000004
Bacteroidota
Riemerella anatipestifer [LUDI]
149967
150038
+
Cys
GCA
[ENA]
¡û
>W1711117686
LUDJ01000010
Bacteroidota
Riemerella anatipestifer [LUDJ]
41016
41089
+
Cys
GCA
[ENA]
¡û
>W1711117728
LUDK01000008
Bacteroidota
Riemerella anatipestifer [LUDK]
41023
41096
+
Cys
GCA
[ENA]
¡û
>W1711117763
LUDL01000010
Bacteroidota
Riemerella anatipestifer [LUDL]
41016
41089
+
Cys
GCA
[ENA]
¡û
>W1711117811
LUDM01000012
Bacteroidota
Riemerella anatipestifer [LUDM]
41016
41089
+
Cys
GCA
[ENA]
¡û
>W1711117847
LUDN01000017
Bacteroidota
Riemerella anatipestifer [LUDN]
3002
3075
+
Cys
GCA
[ENA]
¡û
>W1711117883
LUDO01000010
Bacteroidota
Riemerella anatipestifer [LUDO]
41016
41089
+
Cys
GCA
[ENA]
¡û
>W1711117918
LUDP01000012
Bacteroidota
Riemerella anatipestifer [LUDP]
41021
41094
+
Cys
GCA
[ENA]
¡û
>W1711117955
LUDQ01000010
Bacteroidota
Riemerella anatipestifer [LUDQ]
41016
41089
+
Cys
GCA
[ENA]
¡û
>W1711117970
LUDR01000006
Bacteroidota
Riemerella anatipestifer [LUDR]
149061
149132
+
Cys
GCA
[ENA]
¡û
>W1711118027
LUDS01000011
Bacteroidota
Riemerella anatipestifer [LUDS]
39825
39898
+
Cys
GCA
[ENA]
¡û
>W1711118060
LUDT01000098
Bacteroidota
Riemerella anatipestifer [LUDT]
1170
1243
+
Cys
GCA
[ENA]
¡û
>W1711118099
LUDU01000010
Bacteroidota
Riemerella anatipestifer [LUDU]
6457
6384
-
Cys
GCA
[ENA]
¡û
>W1711118135
LUDV01000011
Bacteroidota
Riemerella anatipestifer [LUDV]
41016
41089
+
Cys
GCA
[ENA]
¡û
>W131170805
ARFT01000006
Bacteroidota
Riemerella columbina DSM 16469 [ARFT]
69213
69140
-
Cys
GCA
[ENA]
¡û
>C171015073
CP011859
Bacteroidota
Riemerella anatipestifer HXb2 [CP011859]
722632
722561
-
Cys
GCA
-
¡û
>WENV183616191
OOEC01146177
[OOEC] marine metagenome; sea ice
122
51
-
Cys
GCA
[ENA]
¢þ
>WENV170921501
MDTG01015578
[MDTG] marine metagenome; seawater
146674
146601
-
Cys
GCA
[ENA]
¢þ
>WENV170984673
MWVV01388075
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
315
242
-
Cys
GCA
[ENA]
¢þ
>C181226370
LT906475
Bacteroidota
Riemerella anatipestifer NCTC11014 [LT906475]
902471
902400
-
Cys
GCA
-
¡û
>C191065593
CP029760
Bacteroidota
Riemerella anatipestifer RCAD0133 [CP029760]
2025291
2025362
+
Cys
GCA
-
¡û
>C191185735
CP041029
Bacteroidota
Riemerella anatipestifer WJ4 [CP041029]
1013474
1013403
-
Cys
GCA
-
¡û
>W1911615653
PPEC01000012
Bacteroidota
Riemerella anatipestifer RA1 [PPEC]
6483
6412
-
Cys
GCA
[ENA]
¡û
>W1911775082
QXMH01000004
Bacteroidota
Chitinophaga alhagiae T22 [QXMH]
307348
307275
-
Cys
GCA
[ENA]
¡û
>W1810191553
PKKR01000004
Bacteroidota
Riemerella anatipestifer 17CS0503 [PKKR]
252244
252315
+
Cys
GCA
[ENA]
¡û
>W1810583128
QEWX01000063
Bacteroidota
Riemerella anatipestifer RA2 [QEWX]
5237
5166
-
Cys
GCA
[ENA]
¡û
>C151010273
CP006649
Bacteroidota
Riemerella anatipestifer CH3 [CP006649]
1554408
1554479
+
Cys
GCA
[Ensembl]
¡û
>C151018461
CP007204
Bacteroidota
Riemerella anatipestifer Yb2 [CP007204]
1687142
1687215
+
Cys
GCA
-
¡û
>C151025749
CP007503
Bacteroidota
Riemerella anatipestifer 17 [CP007503]
887828
887755
-
Cys
GCA
[Ensembl]
¡û
>C151025789
CP007504
Bacteroidota
Riemerella anatipestifer 153 [CP007504]
899834
899761
-
Cys
GCA
[Ensembl]
¡û
>SRA1051179
SRR035096.102046
454 Sequencing (SRP001817)
163
92
-
Cys
GCA
[SRA]
>C11118462
CP002346
Bacteroidota
Riemerella anatipestifer ATCC 11845 = DSM 15868 [CP002346]
900932
900859
-
Cys
GCA
[Ensembl]
¡û
>C11118485
CP002562
Bacteroidota
Riemerella anatipestifer RA-GD [CP002562]
1409273
1409346
+
Cys
GCA
[Ensembl]
¡û
>W11141052
AENH01000010
Bacteroidota
Riemerella anatipestifer RA-YM [AENH]
6075
6002
-
Cys
GCA
[ENA]
¡û
>W1511584126
LAVB01000009
Bacteroidota
Riemerella anatipestifer RA-JLLY [LAVB]
244359
244432
+
Cys
GCA
[ENA]
¡û
>C121012040
CP003388
Bacteroidota
Riemerella anatipestifer ATCC 11845 = DSM 15868 [CP003388]
1061656
1061583
-
Cys
GCA
-
¡û
>C131006670
CP003787
Bacteroidota
Riemerella anatipestifer RA-CH-1 [CP003787]
1123365
1123436
+
Cys
GCA
[Ensembl]
¡û
>C131011611
CP004020
Bacteroidota
Riemerella anatipestifer RA-CH-2 [CP004020]
830952
831025
+
Cys
GCA
[Ensembl]
¡û
>W1610928943
LUDG01000010
Bacteroidota
Riemerella anatipestifer [LUDG]
39825
39898
+
Cys
GCA
[ENA]
¡û
>W1610928979
LUDH01000009
Bacteroidota
Riemerella anatipestifer [LUDH]
41015
41088
+
Cys
GCA
[ENA]
¡û
>W1610929009
LUDI01000004
Bacteroidota
Riemerella anatipestifer [LUDI]
149967
150038
+
Cys
GCA
[ENA]
¡û
>W1610929045
LUDJ01000010
Bacteroidota
Riemerella anatipestifer [LUDJ]
41016
41089
+
Cys
GCA
[ENA]
¡û
>W1610929087
LUDK01000008
Bacteroidota
Riemerella anatipestifer [LUDK]
41023
41096
+
Cys
GCA
[ENA]
¡û
>W1610929122
LUDL01000010
Bacteroidota
Riemerella anatipestifer [LUDL]
41016
41089
+
Cys
GCA
[ENA]
¡û
>W1610929170
LUDM01000012
Bacteroidota
Riemerella anatipestifer [LUDM]
41016
41089
+
Cys
GCA
[ENA]
¡û
>W1610929206
LUDN01000017
Bacteroidota
Riemerella anatipestifer [LUDN]
3002
3075
+
Cys
GCA
[ENA]
¡û
>W1610929242
LUDO01000010
Bacteroidota
Riemerella anatipestifer [LUDO]
41016
41089
+
Cys
GCA
[ENA]
¡û
>W1610929277
LUDP01000012
Bacteroidota
Riemerella anatipestifer [LUDP]
41021
41094
+
Cys
GCA
[ENA]
¡û
>W1610929314
LUDQ01000010
Bacteroidota
Riemerella anatipestifer [LUDQ]
41016
41089
+
Cys
GCA
[ENA]
¡û
>W1610929329
LUDR01000006
Bacteroidota
Riemerella anatipestifer [LUDR]
149061
149132
+
Cys
GCA
[ENA]
¡û
>W1610929386
LUDS01000011
Bacteroidota
Riemerella anatipestifer [LUDS]
39825
39898
+
Cys
GCA
[ENA]
¡û
>W1610929419
LUDT01000098
Bacteroidota
Riemerella anatipestifer [LUDT]
1170
1243
+
Cys
GCA
[ENA]
¡û
>W1610929458
LUDU01000010
Bacteroidota
Riemerella anatipestifer [LUDU]
6457
6384
-
Cys
GCA
[ENA]
¡û
>W1610929494
LUDV01000011
Bacteroidota
Riemerella anatipestifer [LUDV]
41016
41089
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK