This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.482518 (46 seq.)
>W1710799067
LJUH01000011
Chlamydiota
Chlamydiae bacterium SM23_39 [LJUH]
19618
19548
-
Gly
TCC
[ENA]
¡û
>W1711138678
LVEB01000012
Chlamydiota
Waddlia chondrophila WSU 86-1044 [LVEB]
31373
31443
+
Gly
TCC
[ENA]
¡û
>W1711408044
MGLO01000027
Chlamydiota
Chlamydiae bacterium GWA2_50_15 [MGLO]
56716
56786
+
Gly
TCC
[ENA]
¡û
>W1711408067
MGLP01000023
Chlamydiota
Chlamydiae bacterium GWC2_50_10 [MGLP]
12634
12704
+
Gly
TCC
[ENA]
¡û
>C017935
BX908798
Chlamydiota
Candidatus Protochlamydia amoebophila UWE25 [BX908798]
208862
208932
+
Gly
TCC
[Ensembl]
¡û
>WENV180027207
FTIX01000921
[FTIX] metagenome; soil
13028
13098
+
Gly
TCC
[ENA]
¢þ
>WENV180032322
FTJY01077468
[FTJY] metagenome; soil
227
297
+
Gly
TCC
[ENA]
¢þ
>WENV180085977
MPMD02403891
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
521
451
-
Gly
TCC
[ENA]
¢þ
>WENV180345223
OBLM01136243
[OBLM] soil metagenome; soil
160
89
-
Gly
TCC
[ENA]
¢þ
>WENV180354407
OBLQ011708732
[OBLQ] soil metagenome; soil
72
142
+
Gly
TCC
[ENA]
¢þ
>WENV181145241
OEHO01241205
[OEHO] metagenome; unknown
64
134
+
Gly
TCC
[ENA]
¢þ
>WENV181165013
OEIR01517721
[OEIR] soil metagenome; soil
186
114
-
Gly
TCC
[ENA]
¢þ
>W141229832
BASK01001104
Chlamydiota
Neochlamydia sp. S13 [BASK]
19880
19953
+
Gly
TCC
[ENA]
¡û
>W141229898
BASL01000738
Chlamydiota
Candidatus Protochlamydia sp. R18 [BASL]
31652
31722
+
Gly
TCC
[ENA]
¡û
>W141264385
CCEJ010000007
Chlamydiota
Criblamydia sequanensis [CCEJ]
40157
40227
+
Gly
TCC
[ENA]
¡û
>W141265965
CCJF01000005
Chlamydiota
Candidatus Protochlamydia massiliensis 'Diamant' [CCJF]
158509
158439
-
Gly
TCC
[ENA]
¡û
>C191000773
AP017977
Chlamydiota
Neochlamydia sp. S13 [AP017977]
2263725
2263654
-
Gly
TCC
-
¡û
>W1910209072
FLYO01000002
Chlamydiota
Chlamydiales bacterium SCGC AG-110-M15 [FLYO]
67866
67794
-
Gly
TCC
[ENA]
¡û
>W1910725319
MGLR01000018
Chlamydiota
Chlamydiae bacterium RIFCSPHIGHO2_01_FULL_44_39 [MGLR]
69583
69653
+
Gly
TCC
[ENA]
¡û
>W1910725335
MGLS01000003
Chlamydiota
Chlamydiae bacterium RIFCSPHIGHO2_02_FULL_45_9 [MGLS]
5177
5107
-
Gly
TCC
[ENA]
¡û
>W1910725383
MGLT01000041
Chlamydiota
Chlamydiae bacterium RIFCSPHIGHO2_02_FULL_49_29 [MGLT]
15380
15310
-
Gly
TCC
[ENA]
¡û
>W1910725417
MGLU01000045
Chlamydiota
Chlamydiae bacterium RIFCSPHIGHO2_12_FULL_27_8 [MGLU]
3251
3321
+
Gly
TCC
[ENA]
¡û
>W1910725438
MGLV01000012
Chlamydiota
Chlamydiae bacterium RIFCSPHIGHO2_12_FULL_44_59 [MGLV]
69605
69675
+
Gly
TCC
[ENA]
¡û
>W1910725505
MGLX01000035
Chlamydiota
Chlamydiae bacterium RIFCSPHIGHO2_12_FULL_49_32 [MGLX]
38987
38917
-
Gly
TCC
[ENA]
¡û
>W1910725549
MGLY01000088
Chlamydiota
Chlamydiae bacterium RIFCSPHIGHO2_12_FULL_49_9 [MGLY]
185
115
-
Gly
TCC
[ENA]
¡û
>W1910725577
MGMA01000010
Chlamydiota
Chlamydiae bacterium RIFCSPLOWO2_01_FULL_44_52 [MGMA]
69615
69685
+
Gly
TCC
[ENA]
¡û
>W1910725643
MGMC01000017
Chlamydiota
Chlamydiae bacterium RIFCSPLOWO2_02_FULL_49_12 [MGMC]
56199
56129
-
Gly
TCC
[ENA]
¡û
>W1910725682
MGMD01000010
Chlamydiota
Chlamydiae bacterium RIFCSPLOWO2_12_FULL_45_20 [MGMD]
69591
69661
+
Gly
TCC
[ENA]
¡û
>W1910725721
MGME01000019
Chlamydiota
Chlamydiae bacterium RIFCSPLOWO2_12_FULL_49_12 [MGME]
45781
45851
+
Gly
TCC
[ENA]
¡û
>W10107313
ACZE01000057
Chlamydiota
Parachlamydia acanthamoebae str. Hall's coccus [ACZE]
4113
4043
-
Gly
TCC
[ENA]
¡û
>W1510004667
BAWW01000066
Chlamydiota
Parachlamydia acanthamoebae Bn9 [BAWW]
184706
184636
-
Gly
TCC
[ENA]
¡û
>W1510014345
BBPT01000003
Chlamydiota
Parachlamydiaceae bacterium HS-T3 [BBPT]
149485
149555
+
Gly
TCC
[ENA]
¡û
>C10105603
CP001928
Chlamydiota
Waddlia chondrophila WSU 86-1044 [CP001928]
2077034
2077104
+
Gly
TCC
[Ensembl]
¡û
>W1510667331
CWGJ01000025
Chlamydiota
Estrella lausannensis CRIB-30 [CWGJ]
7553
7623
+
Gly
TCC
[ENA]
¡û
>W11109602
ACZE01000057
Chlamydiota
Parachlamydia acanthamoebae str. Hall's coccus [ACZE]
4113
4043
-
Gly
TCC
[ENA]
¡û
>C11116404
FR872580
Chlamydiota
Parachlamydia acanthamoebae UV-7 [FR872580]
475760
475830
+
Gly
TCC
[Ensembl]
¡û
>W1511358814
JRXI01000205
Chlamydiota
Neochlamydia sp. TUME1 [JRXI]
3792
3865
+
Gly
TCC
[ENA]
¡û
>W1511360580
JSAM01000129
Chlamydiota
Parachlamydia acanthamoebae OEW1 [JSAM]
27363
27433
+
Gly
TCC
[ENA]
¡û
>W1511360583
JSAN01000013
Chlamydiota
Candidatus Protochlamydia amoebophila amoebophila EI2 [JSAN]
3412
3482
+
Gly
TCC
[ENA]
¡û
>W1511364928
JSDQ01000026
Chlamydiota
Neochlamydia sp. EPS4 [JSDQ]
32988
32915
-
Gly
TCC
[ENA]
¡û
>C161107091
LN879502
Chlamydiota
Candidatus Protochlamydia naegleriophila KNic [LN879502]
2634881
2634811
-
Gly
TCC
[Ensembl]
¡û
>W1610205968
FCNU01000032
Chlamydiota
Candidatus Protochlamydia phocaeensis C2 [FCNU]
175770
175700
-
Gly
TCC
[ENA]
¡û
>W1610663024
LJUH01000011
Chlamydiota
Chlamydiae bacterium SM23_39 [LJUH]
19618
19548
-
Gly
TCC
[ENA]
¡û
>W1610949718
LVEB01000012
Chlamydiota
Waddlia chondrophila WSU 86-1044 [LVEB]
31373
31443
+
Gly
TCC
[ENA]
¡û
>W1710064134
BCPZ01000156
Chlamydiota
Candidatus Protochlamydia sp. W-9 [BCPZ]
22542
22472
-
Gly
TCC
[ENA]
¡û
>W1710207314
FCNU01000032
Chlamydiota
Candidatus Protochlamydia phocaeensis C2 [FCNU]
175770
175700
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK