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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.482757 (103 seq.)
>W1710799926
LJVG01000039
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
28914
28839
-
Lys
TTT
[ENA]
¡û
>W1710799928
LJVG01000039
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
28614
28539
-
Lys
TTT
[ENA]
¡û
>W1710799929
LJVG01000039
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
28419
28344
-
Lys
TTT
[ENA]
¡û
>W1710799930
LJVG01000039
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
28224
28149
-
Lys
TTT
[ENA]
¡û
>W1710799931
LJVG01000039
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
28029
27954
-
Lys
TTT
[ENA]
¡û
>W131177225
ARKQ01000025
Gammaproteobacteria
Colwellia piezophila ATCC BAA-637 [ARKQ]
2515
2440
-
Lys
TTT
[ENA]
¡û
>W131177227
ARKQ01000026
Gammaproteobacteria
Colwellia piezophila ATCC BAA-637 [ARKQ]
266
191
-
Lys
TTT
[ENA]
¡û
>W131177228
ARKQ01000026
Gammaproteobacteria
Colwellia piezophila ATCC BAA-637 [ARKQ]
95
20
-
Lys
TTT
[ENA]
¡û
>C171034539
CP014944
Gammaproteobacteria
Colwellia sp. PAMC 20917 [CP014944]
3777100
3777175
+
Lys
TTT
-
¡û
>C171034540
CP014944
Gammaproteobacteria
Colwellia sp. PAMC 20917 [CP014944]
3777259
3777334
+
Lys
TTT
-
¡û
>C171034541
CP014944
Gammaproteobacteria
Colwellia sp. PAMC 20917 [CP014944]
3777425
3777500
+
Lys
TTT
-
¡û
>C171034542
CP014944
Gammaproteobacteria
Colwellia sp. PAMC 20917 [CP014944]
3777705
3777780
+
Lys
TTT
-
¡û
>C006786
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
1782999
1783074
+
Lys
TTT
[Ensembl]
¡û
>C006787
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
1783184
1783259
+
Lys
TTT
[Ensembl]
¡û
>C006788
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
1783296
1783371
+
Lys
TTT
[Ensembl]
¡û
>C006789
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
1783465
1783540
+
Lys
TTT
[Ensembl]
¡û
>C006790
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
1783574
1783649
+
Lys
TTT
[Ensembl]
¡û
>C006791
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
1783817
1783892
+
Lys
TTT
[Ensembl]
¡û
>WENV182567759
OJEP01000146
[OJEP] seawater metagenome; Sea water
31030
31105
+
Lys
TTT
[ENA]
¢þ
>WENV182568816
OJEX01000020
[OJEX] seawater metagenome; Sea water
7162
7087
-
Lys
TTT
[ENA]
¢þ
>WENV182579737
OJGT01000102
[OJGT] seawater metagenome; Sea water
12449
12374
-
Lys
TTT
[ENA]
¢þ
>WENV183614756
OODW01071804
[OODW] marine metagenome; sea ice
13
88
+
Lys
TTT
[ENA]
¢þ
>WENV170537642
CEWR01019587
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
114
189
+
Lys
TTT
[ENA]
¢þ
>WENV170537812
CEWR01030006
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
826
901
+
Lys
TTT
[ENA]
¢þ
>WENV170704725
LLEM01000918
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1517
1592
+
Lys
TTT
[ENA]
¢þ
>WENV170704726
LLEM01000918
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1896
1971
+
Lys
TTT
[ENA]
¢þ
>WENV170704727
LLEM01000918
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
2166
2241
+
Lys
TTT
[ENA]
¢þ
>WENV170704874
LLEN01007653
[LLEN] bioreactor metagenome; day86 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
201
276
+
Lys
TTT
[ENA]
¢þ
>WENV170780337
MAAA01029067
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
1087
1162
+
Lys
TTT
[ENA]
¢þ
>WENV170780972
MAAB01028906
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
6774
6699
-
Lys
TTT
[ENA]
¢þ
>WENV170780973
MAAB01028906
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
6521
6446
-
Lys
TTT
[ENA]
¢þ
>WENV170780974
MAAB01028906
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
6410
6335
-
Lys
TTT
[ENA]
¢þ
>WENV170781068
MAAB01029282
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
16321
16396
+
Lys
TTT
[ENA]
¢þ
>WENV170781113
MAAB01029419
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
5040
4965
-
Lys
TTT
[ENA]
¢þ
>WENV170781114
MAAB01029419
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
4855
4780
-
Lys
TTT
[ENA]
¢þ
>WENV170781115
MAAB01029419
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
4737
4662
-
Lys
TTT
[ENA]
¢þ
>WENV170781116
MAAB01029419
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
4555
4480
-
Lys
TTT
[ENA]
¢þ
>WENV170781117
MAAB01029419
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
4442
4367
-
Lys
TTT
[ENA]
¢þ
>WENV170781118
MAAB01029419
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
4331
4256
-
Lys
TTT
[ENA]
¢þ
>WENV170781179
MAAB01029622
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
24924
24999
+
Lys
TTT
[ENA]
¢þ
>WENV170781180
MAAB01029622
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
25096
25171
+
Lys
TTT
[ENA]
¢þ
>WENV170781183
MAAB01029630
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
28047
27972
-
Lys
TTT
[ENA]
¢þ
>WENV170781184
MAAB01029630
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
27888
27813
-
Lys
TTT
[ENA]
¢þ
>WENV170781185
MAAB01029630
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
27737
27662
-
Lys
TTT
[ENA]
¢þ
>WENV170781186
MAAB01029630
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
27583
27508
-
Lys
TTT
[ENA]
¢þ
>WENV170782480
MAAC01010146
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
6775
6700
-
Lys
TTT
[ENA]
¢þ
>WENV170782481
MAAC01010146
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
6522
6447
-
Lys
TTT
[ENA]
¢þ
>WENV170782482
MAAC01010146
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
6411
6336
-
Lys
TTT
[ENA]
¢þ
>WENV170782534
MAAC01010181
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
43428
43353
-
Lys
TTT
[ENA]
¢þ
>WENV170782535
MAAC01010181
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
43256
43181
-
Lys
TTT
[ENA]
¢þ
>WENV170782536
MAAC01010181
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
43085
43010
-
Lys
TTT
[ENA]
¢þ
>WENV170782882
MAAC01011639
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
2838
2763
-
Lys
TTT
[ENA]
¢þ
>WENV170782883
MAAC01011639
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
2687
2612
-
Lys
TTT
[ENA]
¢þ
>WENV170782887
MAAC01011807
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
41
116
+
Lys
TTT
[ENA]
¢þ
>WENV170782947
MAAC01012138
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
1125
1050
-
Lys
TTT
[ENA]
¢þ
>WENV170782948
MAAC01012138
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
948
873
-
Lys
TTT
[ENA]
¢þ
>WENV170782949
MAAC01012138
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
772
697
-
Lys
TTT
[ENA]
¢þ
>WENV170782950
MAAC01012138
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
522
447
-
Lys
TTT
[ENA]
¢þ
>WENV170783122
MAAC01013837
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
14102
14177
+
Lys
TTT
[ENA]
¢þ
>W1810155073
PJAI01000019
Gammaproteobacteria
Colwellia echini A3T [PJAI]
121904
121829
-
Lys
TTT
[ENA]
¡û
>W1810155074
PJAI01000019
Gammaproteobacteria
Colwellia echini A3T [PJAI]
121707
121632
-
Lys
TTT
[ENA]
¡û
>W1810155075
PJAI01000019
Gammaproteobacteria
Colwellia echini A3T [PJAI]
121594
121519
-
Lys
TTT
[ENA]
¡û
>W1810155076
PJAI01000019
Gammaproteobacteria
Colwellia echini A3T [PJAI]
121475
121400
-
Lys
TTT
[ENA]
¡û
>W1810155356
PJAQ01000017
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
145400
145325
-
Lys
TTT
[ENA]
¡û
>W1810155357
PJAQ01000017
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
145208
145133
-
Lys
TTT
[ENA]
¡û
>W1810155358
PJAQ01000017
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
145096
145021
-
Lys
TTT
[ENA]
¡û
>W1810155359
PJAQ01000017
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
144922
144847
-
Lys
TTT
[ENA]
¡û
>W1810155360
PJAQ01000017
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
144813
144738
-
Lys
TTT
[ENA]
¡û
>W1810155361
PJAQ01000017
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
144646
144571
-
Lys
TTT
[ENA]
¡û
>W1810155362
PJAQ01000017
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
144353
144278
-
Lys
TTT
[ENA]
¡û
>W1810155563
PJAU01000055
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
76497
76572
+
Lys
TTT
[ENA]
¡û
>W1810155564
PJAU01000055
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
76682
76757
+
Lys
TTT
[ENA]
¡û
>W1810155565
PJAU01000055
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
76794
76869
+
Lys
TTT
[ENA]
¡û
>W1810155566
PJAU01000055
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
76980
77055
+
Lys
TTT
[ENA]
¡û
>W1810155567
PJAU01000055
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
77089
77164
+
Lys
TTT
[ENA]
¡û
>W1810155568
PJAU01000055
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
77253
77328
+
Lys
TTT
[ENA]
¡û
>W1810155569
PJAU01000055
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
77419
77494
+
Lys
TTT
[ENA]
¡û
>W1810155570
PJAU01000055
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
77581
77656
+
Lys
TTT
[ENA]
¡û
>W1810155972
PJBA01000002
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
84926
85001
+
Lys
TTT
[ENA]
¡û
>W1810155973
PJBA01000002
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
85125
85200
+
Lys
TTT
[ENA]
¡û
>W1810155974
PJBA01000002
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
85237
85312
+
Lys
TTT
[ENA]
¡û
>W1810155975
PJBA01000002
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
85406
85481
+
Lys
TTT
[ENA]
¡û
>W1810155976
PJBA01000002
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
85515
85590
+
Lys
TTT
[ENA]
¡û
>W1810155977
PJBA01000002
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
85758
85833
+
Lys
TTT
[ENA]
¡û
>W1810735872
QOLD01000037
Gammaproteobacteria
Candidatus Colwellia aromaticivorans Bin11-node4 [QOLD]
11696
11771
+
Lys
TTT
[ENA]
¡û
>W1810735873
QOLD01000037
Gammaproteobacteria
Candidatus Colwellia aromaticivorans Bin11-node4 [QOLD]
11873
11948
+
Lys
TTT
[ENA]
¡û
>W1810735874
QOLD01000037
Gammaproteobacteria
Candidatus Colwellia aromaticivorans Bin11-node4 [QOLD]
12051
12126
+
Lys
TTT
[ENA]
¡û
>W1511322872
JQEC01000015
Gammaproteobacteria
Colwellia psychrerythraea GAB14E [JQEC]
66734
66659
-
Lys
TTT
[ENA]
¡û
>W1511322874
JQEC01000015
Gammaproteobacteria
Colwellia psychrerythraea GAB14E [JQEC]
66435
66360
-
Lys
TTT
[ENA]
¡û
>W1511322875
JQEC01000015
Gammaproteobacteria
Colwellia psychrerythraea GAB14E [JQEC]
66310
66235
-
Lys
TTT
[ENA]
¡û
>W1511322876
JQEC01000015
Gammaproteobacteria
Colwellia psychrerythraea GAB14E [JQEC]
66149
66074
-
Lys
TTT
[ENA]
¡û
>C161052274
CP013145
Gammaproteobacteria
Colwellia sp. MT41 [CP013145]
2608865
2608790
-
Lys
TTT
[Ensembl]
¡û
>C161052276
CP013145
Gammaproteobacteria
Colwellia sp. MT41 [CP013145]
2608565
2608490
-
Lys
TTT
[Ensembl]
¡û
>C161052277
CP013145
Gammaproteobacteria
Colwellia sp. MT41 [CP013145]
2608370
2608295
-
Lys
TTT
[Ensembl]
¡û
>C161052278
CP013145
Gammaproteobacteria
Colwellia sp. MT41 [CP013145]
2608175
2608100
-
Lys
TTT
[Ensembl]
¡û
>W1610663883
LJVG01000039
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
28914
28839
-
Lys
TTT
[ENA]
¡û
>W1610663885
LJVG01000039
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
28614
28539
-
Lys
TTT
[ENA]
¡û
>W1610663886
LJVG01000039
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
28419
28344
-
Lys
TTT
[ENA]
¡û
>W1610663887
LJVG01000039
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
28224
28149
-
Lys
TTT
[ENA]
¡û
>W1610663888
LJVG01000039
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
28029
27954
-
Lys
TTT
[ENA]
¡û
>W1710087360
BDQM01000030
Gammaproteobacteria
Colwellia marinimaniae [BDQM]
42663
42738
+
Lys
TTT
[ENA]
¡û
>W1710087372
BDQM01000042
Gammaproteobacteria
Colwellia marinimaniae [BDQM]
27366
27291
-
Lys
TTT
[ENA]
¡û
>W1710087392
BDQM01000151
Gammaproteobacteria
Colwellia marinimaniae [BDQM]
300
375
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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