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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.482907 (96 seq.)
>W1710926755
LOEL01000026
Bacteroidota
Porphyromonas gingivalis [LOEL]
5276
5349
+
Gln
CTG
[ENA]
¡û
>W131111452
APMB01000240
Bacteroidota
Porphyromonas gingivalis JCVI SC001 [APMB]
4509
4582
+
Gln
CTG
[ENA]
¡û
>W131175786
ARJN01000033
Bacteroidota
Porphyromonas gulae DSM 15663 [ARJN]
13057
12984
-
Gln
CTG
[ENA]
¡û
>W1712084862
NHRU01000002
Bacteroidota
Porphyromonas gingivalis [NHRU]
32774
32701
-
Gln
CTG
[ENA]
¡û
>C016388
AE015924
Bacteroidota
Porphyromonas gingivalis W83 [AE015924]
1315476
1315403
-
Gln
CTG
[Ensembl]
¡û
>WENV180004019
FLRQ01008467
[FLRQ] metagenome; saliva
386
315
-
Gln
CTG
[ENA]
¢þ
>WENV180010801
FLSD01172394
[FLSD] metagenome; saliva
3
74
+
Gln
CTG
[ENA]
¢þ
>WENV180010993
FLSI01064942
[FLSI] metagenome; saliva
74
3
-
Gln
CTG
[ENA]
¢þ
>W141074439
ASYL01000090
Bacteroidota
Porphyromonas gingivalis SJD2 [ASYL]
8069
7996
-
Gln
CTG
[ENA]
¡û
>W141145630
AWUU01000059
Bacteroidota
Porphyromonas gingivalis F0568 [AWUU]
4037
4110
+
Gln
CTG
[ENA]
¡û
>W141145680
AWUV01000094
Bacteroidota
Porphyromonas gingivalis F0569 [AWUV]
13438
13511
+
Gln
CTG
[ENA]
¡û
>W141145712
AWUW01000048
Bacteroidota
Porphyromonas gingivalis F0570 [AWUW]
3953
4026
+
Gln
CTG
[ENA]
¡û
>W141145987
AWVD01000071
Bacteroidota
Porphyromonas gingivalis F0566 [AWVD]
4103
4030
-
Gln
CTG
[ENA]
¡û
>W141146033
AWVE01000056
Bacteroidota
Porphyromonas gingivalis W4087 [AWVE]
19524
19451
-
Gln
CTG
[ENA]
¡û
>WENV181774363
OGRE01013770
[OGRE] human gut metagenome; faeces
616
545
-
Gln
CTG
[ENA]
¢þ
>WENV182004964
OHBE01001126
[OHBE] human gut metagenome; faeces
19610
19539
-
Gln
CTG
[ENA]
¢þ
>C08007303
AP009380
Bacteroidota
Porphyromonas gingivalis ATCC 33277 [AP009380]
1530170
1530097
-
Gln
CTG
[Ensembl]
¡û
>WENV183507904
OMGZ01000216
[OMGZ] human oral metagenome; human oral
1881
1952
+
Gln
CTG
[ENA]
¢þ
>WENV183507978
OMHA01000148
[OMHA] human oral metagenome; human oral
1157
1086
-
Gln
CTG
[ENA]
¢þ
>WENV183510898
OMHT01000165
[OMHT] human oral metagenome; human oral
3681
3610
-
Gln
CTG
[ENA]
¢þ
>WENV183704418
PDWI01000215
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
97407
97478
+
Gln
CTG
[ENA]
¢þ
>WENV183704892
PDWI01000736
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
52857
52928
+
Gln
CTG
[ENA]
¢þ
>WENV183706226
PDWI01003496
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
26
97
+
Gln
CTG
[ENA]
¢þ
>WENV183707067
PDWI01006580
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4106
4177
+
Gln
CTG
[ENA]
¢þ
>WENV183707398
PDWI01008261
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
7826
7755
-
Gln
CTG
[ENA]
¢þ
>WENV183708772
PDWI01019647
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2109
2038
-
Gln
CTG
[ENA]
¢þ
>WENV183712149
PDWI01090485
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
134
205
+
Gln
CTG
[ENA]
¢þ
>WENV183714181
PDWI01172424
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1363
1434
+
Gln
CTG
[ENA]
¢þ
>WENV183714744
PDWI01201266
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1014
1085
+
Gln
CTG
[ENA]
¢þ
>WENV183721577
PDWJ01075830
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
778
849
+
Gln
CTG
[ENA]
¢þ
>C181102065
CP024591
Bacteroidota
Porphyromonas gingivalis KCOM 2802 [CP024591]
39887
39958
+
Gln
CTG
-
¡û
>C181102151
CP024592
Bacteroidota
Porphyromonas gingivalis KCOM 2803 [CP024592]
1401171
1401100
-
Gln
CTG
-
¡û
>C181102180
CP024593
Bacteroidota
Porphyromonas gingivalis KCOM 2804 [CP024593]
2176334
2176405
+
Gln
CTG
-
¡û
>C181102221
CP024594
Bacteroidota
Porphyromonas gingivalis KCOM 2805 [CP024594]
1163124
1163195
+
Gln
CTG
-
¡û
>C181102298
CP024595
Bacteroidota
Porphyromonas gingivalis KCOM 3001 [CP024595]
1247401
1247330
-
Gln
CTG
-
¡û
>C181102322
CP024596
Bacteroidota
Porphyromonas gingivalis KCOM 3131 [CP024596]
1610958
1611029
+
Gln
CTG
-
¡û
>C181102378
CP024597
Bacteroidota
Porphyromonas gingivalis KCOM 2796 [CP024597]
2075053
2074982
-
Gln
CTG
-
¡û
>C181102435
CP024598
Bacteroidota
Porphyromonas gingivalis KCOM 2798 [CP024598]
2216970
2217041
+
Gln
CTG
-
¡û
>C181102485
CP024599
Bacteroidota
Porphyromonas gingivalis KCOM 2800 [CP024599]
1883487
1883558
+
Gln
CTG
-
¡û
>C181102525
CP024600
Bacteroidota
Porphyromonas gingivalis KCOM 2801 [CP024600]
1533718
1533789
+
Gln
CTG
-
¡û
>C181102553
CP024601
Bacteroidota
Porphyromonas gingivalis KCOM 2799 [CP024601]
32498
32569
+
Gln
CTG
-
¡û
>C181123607
CP025930
Bacteroidota
Porphyromonas gingivalis ATCC 33277 [CP025930]
1556067
1555996
-
Gln
CTG
-
¡û
>C181123635
CP025931
Bacteroidota
Porphyromonas gingivalis TDC 60 [CP025931]
911229
911300
+
Gln
CTG
-
¡û
>C181123685
CP025932
Bacteroidota
Porphyromonas gingivalis W83 [CP025932]
1100185
1100256
+
Gln
CTG
-
¡û
>W1910371029
FUFB01000043
Bacteroidota
Porphyromonas gingivalis 3_3 [FUFB]
9821
9750
-
Gln
CTG
[ENA]
¡û
>W1910371084
FUFC01000051
Bacteroidota
Porphyromonas gingivalis 3A1 [FUFC]
26927
26998
+
Gln
CTG
[ENA]
¡û
>W1910371128
FUFD01000069
Bacteroidota
Porphyromonas gingivalis 7BTORR [FUFD]
4401
4472
+
Gln
CTG
[ENA]
¡û
>W1910371150
FUFE01000061
Bacteroidota
Porphyromonas gingivalis 11A [FUFE]
27018
26947
-
Gln
CTG
[ENA]
¡û
>W1910371203
FUFF01000015
Bacteroidota
Porphyromonas gingivalis A7A1_28 [FUFF]
305617
305546
-
Gln
CTG
[ENA]
¡û
>W1910371250
FUFG01000045
Bacteroidota
Porphyromonas gingivalis 84_3 [FUFG]
21874
21945
+
Gln
CTG
[ENA]
¡û
>W1910371290
FUFH01000052
Bacteroidota
Porphyromonas gingivalis ATCC 49417 [FUFH]
4147
4076
-
Gln
CTG
[ENA]
¡û
>W1910371327
FUFI01000027
Bacteroidota
Porphyromonas gingivalis SU60 [FUFI]
158917
158846
-
Gln
CTG
[ENA]
¡û
>W1910371349
FUFJ01000021
Bacteroidota
Porphyromonas gingivalis AFR5B1 [FUFJ]
4020
4091
+
Gln
CTG
[ENA]
¡û
>W1910372563
FUGF01000023
Bacteroidota
Porphyromonas gingivalis 15_9 [FUGF]
9932
9861
-
Gln
CTG
[ENA]
¡û
>W1910372630
FUGG01000059
Bacteroidota
Porphyromonas gingivalis 13_1 [FUGG]
27119
27048
-
Gln
CTG
[ENA]
¡û
>W1911247364
NSLL01000007
Bacteroidota
Porphyromonas gingivalis WW5127 [NSLL]
22068
22139
+
Gln
CTG
[ENA]
¡û
>W1911247432
NSLM01000019
Bacteroidota
Porphyromonas gingivalis WW5019 [NSLM]
23364
23435
+
Gln
CTG
[ENA]
¡û
>W1911247477
NSLN01000053
Bacteroidota
Porphyromonas gingivalis WW3039 [NSLN]
7414
7343
-
Gln
CTG
[ENA]
¡û
>W1911247514
NSLO01000028
Bacteroidota
Porphyromonas gingivalis WW3102 [NSLO]
4516
4587
+
Gln
CTG
[ENA]
¡û
>W1911247558
NSLP01000034
Bacteroidota
Porphyromonas gingivalis WW3040 [NSLP]
20674
20603
-
Gln
CTG
[ENA]
¡û
>W1911247592
NSLQ01000018
Bacteroidota
Porphyromonas gingivalis WW2952 [NSLQ]
21717
21788
+
Gln
CTG
[ENA]
¡û
>W1911247623
NSLR01000007
Bacteroidota
Porphyromonas gingivalis WW2931 [NSLR]
56349
56420
+
Gln
CTG
[ENA]
¡û
>W1911247686
NSLS01000017
Bacteroidota
Porphyromonas gingivalis WW2903 [NSLS]
34263
34192
-
Gln
CTG
[ENA]
¡û
>W1911247729
NSLT01000032
Bacteroidota
Porphyromonas gingivalis WW2885 [NSLT]
19617
19546
-
Gln
CTG
[ENA]
¡û
>W1911247756
NSLU01000022
Bacteroidota
Porphyromonas gingivalis WW2881 [NSLU]
23634
23705
+
Gln
CTG
[ENA]
¡û
>W1911247792
NSLV01000004
Bacteroidota
Porphyromonas gingivalis WW2866 [NSLV]
7414
7343
-
Gln
CTG
[ENA]
¡û
>W1911247833
NSLW01000001
Bacteroidota
Porphyromonas gingivalis WW2842 [NSLW]
206260
206189
-
Gln
CTG
[ENA]
¡û
>W1911247902
NSLX01000029
Bacteroidota
Porphyromonas gingivalis WW2096 [NSLX]
4431
4502
+
Gln
CTG
[ENA]
¡û
>W1911709112
QPGS01000005
Bacteroidota
Porphyromonas gingivalis 381OKJP [QPGS]
52786
52715
-
Gln
CTG
[ENA]
¡û
>W1810573714
QEKY01000003
Bacteroidota
Porphyromonas loveana DSM 28520 [QEKY]
127399
127328
-
Gln
CTG
[ENA]
¡û
>C151089033
CP011995
Bacteroidota
Porphyromonas gingivalis A7436 [CP011995]
855646
855719
+
Gln
CTG
-
¡û
>C151089080
CP011996
Bacteroidota
Porphyromonas gingivalis AJW4 [CP011996]
740996
741069
+
Gln
CTG
-
¡û
>C11117328
AP012203
Bacteroidota
Porphyromonas gingivalis TDC60 [AP012203]
1247678
1247605
-
Gln
CTG
[Ensembl]
¡û
>W1511328354
JQJE01000017
Bacteroidota
Porphyromonas gulae OH3161B [JQJE]
13612
13685
+
Gln
CTG
[ENA]
¡û
>W1511336119
JQZY01000009
Bacteroidota
Porphyromonas sp. COT-052 OH4946 [JQZY]
333946
334019
+
Gln
CTG
[ENA]
¡û
>W1511336369
JRAE01000070
Bacteroidota
Porphyromonas gulae COT-052_OH2199 [JRAE]
55853
55926
+
Gln
CTG
[ENA]
¡û
>W1511336406
JRAF01000045
Bacteroidota
Porphyromonas gulae COT-052 OH3498 [JRAF]
9537
9610
+
Gln
CTG
[ENA]
¡û
>W1511336435
JRAG01000007
Bacteroidota
Porphyromonas gulae COT-052 OH1355 [JRAG]
9691
9764
+
Gln
CTG
[ENA]
¡û
>W1511336525
JRAI01000010
Bacteroidota
Porphyromonas gulae COT-052 OH1451 [JRAI]
4482
4555
+
Gln
CTG
[ENA]
¡û
>W1511336598
JRAJ01000017
Bacteroidota
Porphyromonas gulae COT-052 OH2179 [JRAJ]
121191
121264
+
Gln
CTG
[ENA]
¡û
>W1511336623
JRAK01000073
Bacteroidota
Porphyromonas gulae COT-052 OH3439 [JRAK]
5915
5988
+
Gln
CTG
[ENA]
¡û
>W1511336667
JRAL01000023
Bacteroidota
Porphyromonas gulae COT-052 OH4119 [JRAL]
11542
11615
+
Gln
CTG
[ENA]
¡û
>W1511336833
JRAQ01000021
Bacteroidota
Porphyromonas gulae COT-052 OH3471 [JRAQ]
42670
42743
+
Gln
CTG
[ENA]
¡û
>W1511336947
JRAT01000014
Bacteroidota
Porphyromonas gulae COT-052 OH3856 [JRAT]
125164
125237
+
Gln
CTG
[ENA]
¡û
>W1511343949
JRFD01000052
Bacteroidota
Porphyromonas gulae COT-052 OH2857 [JRFD]
30813
30740
-
Gln
CTG
[ENA]
¡û
>C161018136
CP007756
Bacteroidota
Porphyromonas gingivalis HG66 [CP007756]
1226364
1226437
+
Gln
CTG
[Ensembl]
¡û
>C161046948
CP012889
Bacteroidota
Porphyromonas gingivalis 381 [CP012889]
1554148
1554075
-
Gln
CTG
-
¡û
>C161051769
CP013131
Bacteroidota
Porphyromonas gingivalis A7A1-28 [CP013131]
768217
768290
+
Gln
CTG
-
¡û
>W121073563
AJZS01000060
Bacteroidota
Porphyromonas gingivalis W50 [AJZS]
10151
10078
-
Gln
CTG
[ENA]
¡û
>W1610060528
BCBV01000026
Bacteroidota
Porphyromonas gingivalis [BCBV]
52965
52892
-
Gln
CTG
[ENA]
¡û
>W1610784248
LOEL01000026
Bacteroidota
Porphyromonas gingivalis [LOEL]
5276
5349
+
Gln
CTG
[ENA]
¡û
>W1710017884
ASYM01000069
Bacteroidota
Porphyromonas gingivalis SJD4 [ASYM]
19603
19530
-
Gln
CTG
[ENA]
¡û
>W1710017923
ASYN01000114
Bacteroidota
Porphyromonas gingivalis SJD5 [ASYN]
19571
19498
-
Gln
CTG
[ENA]
¡û
>W1710017969
ASYO01000074
Bacteroidota
Porphyromonas gingivalis SJD11 [ASYO]
19466
19393
-
Gln
CTG
[ENA]
¡û
>W1710018033
ASYP01000141
Bacteroidota
Porphyromonas gingivalis SJD12 [ASYP]
7872
7799
-
Gln
CTG
[ENA]
¡û
>W1710057783
BCBV01000026
Bacteroidota
Porphyromonas gingivalis [BCBV]
52965
52892
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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