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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.483062 (53 seq.)
>W1710877827
LMQL01000003
Betaproteobacteria
Ramlibacter sp. Leaf400 [LMQL]
238021
238096
+
Thr
CGT
[ENA]
¡û
>W1711307460
MAOS01000083
Betaproteobacteria
Pandoraea sp. ISTKB [MAOS]
76991
76916
-
Thr
CGT
[ENA]
¡û
>W1711385114
MEDS01000014
Betaproteobacteria
Comamonas sp. SCN 65-56 [MEDS]
37386
37461
+
Thr
CGT
[ENA]
¡û
>W1711386829
MEFV01000003
Betaproteobacteria
Comamonas sp. SCN 67-35 [MEFV]
88985
89060
+
Thr
CGT
[ENA]
¡û
>W1711504575
MKUR01000042
Betaproteobacteria
Burkholderiales bacterium 66-26 [MKUR]
178163
178088
-
Thr
CGT
[ENA]
¡û
>W1711505733
MKVU01000007
Betaproteobacteria
Pandoraea sp. 64-18 [MKVU]
104537
104612
+
Thr
CGT
[ENA]
¡û
>W1712077098
NGUQ01000011
Betaproteobacteria
Pandoraea sp. PE-S2T-3 [NGUQ]
19316
19391
+
Thr
CGT
[ENA]
¡û
>W1712077163
NGUR01000007
Betaproteobacteria
Pandoraea sp. PE-S2R-1 [NGUR]
172605
172530
-
Thr
CGT
[ENA]
¡û
>C171007340
CP010518
Betaproteobacteria
Pandoraea apista TF81F4 [CP010518]
258958
259033
+
Thr
CGT
-
¡û
>W131155703
AQOU01000024
Betaproteobacteria
Pandoraea sp. SD6-2 [AQOU]
63401
63326
-
Thr
CGT
[ENA]
¡û
>WENV180022970
FTHB01000066
[FTHB] metagenome; soil
2042
2117
+
Thr
CGT
[ENA]
¢þ
>WENV180695386
OCZS013414451
[OCZS] soil metagenome; soil
142
67
-
Thr
CGT
[ENA]
¢þ
>W141091694
AUZF01000031
Betaproteobacteria
Pandoraea pnomenusa RB-44 [AUZF]
21243
21318
+
Thr
CGT
[ENA]
¡û
>WENV181308145
OFIS01000334
[OFIS] sludge metagenome; sludge
26021
25946
-
Thr
CGT
[ENA]
¢þ
>WENV181311207
OFJB01000254
[OFJB] sludge metagenome; sludge
19189
19264
+
Thr
CGT
[ENA]
¢þ
>WENV181401353
OFTX01000029
[OFTX] sludge metagenome; sludge
23497
23572
+
Thr
CGT
[ENA]
¢þ
>WENV181401722
OFTX01003987
[OFTX] sludge metagenome; sludge
2
77
+
Thr
CGT
[ENA]
¢þ
>WENV181401734
OFTX01004412
[OFTX] sludge metagenome; sludge
1557
1632
+
Thr
CGT
[ENA]
¢þ
>WENV181402282
OFTY01000417
[OFTY] sludge metagenome; sludge
7148
7073
-
Thr
CGT
[ENA]
¢þ
>W141199920
AYXJ01000037
Betaproteobacteria
Pandoraea sp. E26 [AYXJ]
61814
61739
-
Thr
CGT
[ENA]
¡û
>WENV183688534
ORMF011302930
[ORMF] groundwater metagenome; groundwater
121
196
+
Thr
CGT
[ENA]
¢þ
>C181008350
CP010518
Betaproteobacteria
Pandoraea apista TF81F4 [CP010518]
2193485
2193560
+
Thr
CGT
-
¡û
>C181014188
CP014018
Betaproteobacteria
Pandoraea apista FDAARGOS_126 [CP014018]
4435866
4435941
+
Thr
CGT
-
¡û
>C181158483
CP027667
Betaproteobacteria
Melaminivora suipulveris SC2-9 [CP027667]
3736716
3736641
-
Thr
CGT
-
¡û
>C181224205
LT906435
Betaproteobacteria
Pandoraea sputorum NCTC13161 [LT906435]
1476423
1476348
-
Thr
CGT
-
¡û
>C191072705
CP030849
Betaproteobacteria
Pandoraea sp. XY-2 [CP030849]
3475627
3475702
+
Thr
CGT
-
¡û
>C191189007
CP041237
Betaproteobacteria
Pandoraea pnomenusa M202 [CP041237]
3689690
3689765
+
Thr
CGT
-
¡û
>W141816815
JQKD01000050
Betaproteobacteria
Xenophilus azovorans DSM 13620 [JQKD]
2823
2748
-
Thr
CGT
[ENA]
¡û
>C141010475
CP006900
Betaproteobacteria
Pandoraea pnomenusa 3kgm [CP006900]
1498881
1498806
-
Thr
CGT
-
¡û
>C141010794
CP006938
Betaproteobacteria
Pandoraea pnomenusa RB-44 [CP006938]
578412
578487
+
Thr
CGT
[Ensembl]
¡û
>W1910856318
NBTA01000013
Betaproteobacteria
Pandoraea apista Pa16226 [NBTA]
234487
234412
-
Thr
CGT
[ENA]
¡û
>W1810088960
PGEI01000129
Betaproteobacteria
Comamonadaceae bacterium CD01 [PGEI]
7442
7517
+
Thr
CGT
[ENA]
¡û
>W1810427571
PYYA01000019
Betaproteobacteria
Pandoraea apista Pa14367 [PYYA]
75415
75490
+
Thr
CGT
[ENA]
¡û
>W1810609639
QGUB01000004
Betaproteobacteria
Melaminivora alkalimesophila DSM 26006 [QGUB]
274090
274165
+
Thr
CGT
[ENA]
¡û
>W1810759939
QPJU01000009
Betaproteobacteria
Extensimonas vulgaris DSM 100911 [QPJU]
84700
84625
-
Thr
CGT
[ENA]
¡û
>C151053895
CP009553
Betaproteobacteria
Pandoraea pnomenusa DSM 16536 [CP009553]
1497103
1497178
+
Thr
CGT
-
¡û
>C151066402
CP010310
Betaproteobacteria
Pandoraea pulmonicola DSM 16583 [CP010310]
178430
178505
+
Thr
CGT
[Ensembl]
¡û
>C151068692
CP010431
Betaproteobacteria
Pandoraea sputorum DSM 21091 [CP010431]
2444441
2444366
-
Thr
CGT
[Ensembl]
¡û
>C151073993
CP010897
Betaproteobacteria
Pandoraea vervacti NS15 [CP010897]
3919846
3919921
+
Thr
CGT
[Ensembl]
¡û
>C151078552
CP011253
Betaproteobacteria
Pandoraea oxalativorans DSM 23570 [CP011253]
117878
117953
+
Thr
CGT
[Ensembl]
¡û
>C151079006
CP011279
Betaproteobacteria
Pandoraea apista TF80G25 [CP011279]
258958
259033
+
Thr
CGT
[Ensembl]
¡û
>C151083363
CP011501
Betaproteobacteria
Pandoraea apista AU2161 [CP011501]
4166827
4166902
+
Thr
CGT
[Ensembl]
¡û
>C151086748
CP011807
Betaproteobacteria
Pandoraea faecigallinarum DSM 23572 [CP011807]
925664
925739
+
Thr
CGT
[Ensembl]
¡û
>W1510100625
CEWL01000004
Betaproteobacteria
Pandoraea apista LMG16407 [CEWL]
76153
76228
+
Thr
CGT
[ENA]
¡û
>W1511397431
JTCR01000010
Betaproteobacteria
Pandoraea fibrosis 6399 [JTCR]
97400
97475
+
Thr
CGT
[ENA]
¡û
>W1511397516
JTCS01000025
Betaproteobacteria
Pandoraea fibrosis 7641 [JTCS]
111756
111681
-
Thr
CGT
[ENA]
¡û
>C161017195
CP007506
Betaproteobacteria
Pandoraea pnomenusa RB38 [CP007506]
3691420
3691495
+
Thr
CGT
-
¡û
>C161056215
CP013480
Betaproteobacteria
Pandoraea norimbergensis DSM 11628 [CP013480]
3369985
3369910
-
Thr
CGT
-
¡û
>C161056274
CP013481
Betaproteobacteria
Pandoraea apista DSM 16535 [CP013481]
5310979
5310904
-
Thr
CGT
-
¡û
>C161086512
CP015371
Betaproteobacteria
Pandoraea pnomenusa MCB032 [CP015371]
848691
848766
+
Thr
CGT
[Ensembl]
¡û
>W121102827
AKXS01000172
Betaproteobacteria
Pandoraea sp. B-6 [AKXS]
41826
41901
+
Thr
CGT
[ENA]
¡û
>W121108933
ALEE01000792
Betaproteobacteria
Melaminivora alkalimesophila CRZ1 [ALEE]
8970
9045
+
Thr
CGT
[ENA]
¡û
>W1610740173
LMQL01000003
Betaproteobacteria
Ramlibacter sp. Leaf400 [LMQL]
238021
238096
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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