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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.483386 (36 seq.)
>W1711724404
MTQD01000008
Gammaproteobacteria
Pseudoalteromonas sp. EB27 [MTQD]
128084
128159
+
Ala
GGC
[ENA]
¡û
>C171097271
CP019628
Gammaproteobacteria
Pseudoalteromonas aliena EH1 [CP019628]
3128712
3128787
+
Ala
GGC
-
¡û
>W131051942
AMYA01000056
Gammaproteobacteria
Pseudoalteromonas sp. Bsw20308 [AMYA]
23499
23424
-
Ala
GGC
[ENA]
¡û
>W141086517
AUTI01000223
Gammaproteobacteria
Pseudoalteromonas sp. TB25 TB25 [AUTI]
5677
5752
+
Ala
GGC
[ENA]
¡û
>W141086631
AUTJ01000176
Gammaproteobacteria
Pseudoalteromonas sp. TB13 TB13 [AUTJ]
582
507
-
Ala
GGC
[ENA]
¡û
>W141086727
AUTK01000466
Gammaproteobacteria
Pseudoalteromonas sp. AC163 AC163 [AUTK]
193
118
-
Ala
GGC
[ENA]
¡û
>W141086808
AUTL01000196
Gammaproteobacteria
Pseudoalteromonas sp. TAE79 TAE79 [AUTL]
41184
41259
+
Ala
GGC
[ENA]
¡û
>W141086926
AUTM01000250
Gammaproteobacteria
Pseudoalteromonas sp. TAE80 TAE80 [AUTM]
582
507
-
Ala
GGC
[ENA]
¡û
>W141087033
AUTN01000162
Gammaproteobacteria
Pseudoalteromonas sp. TAE56 TAE56 [AUTN]
37786
37861
+
Ala
GGC
[ENA]
¡û
>W141087154
AUTP01000168
Gammaproteobacteria
Pseudoalteromonas sp. TAB23 TAB23 [AUTP]
578
503
-
Ala
GGC
[ENA]
¡û
>W141087259
AUTQ01000124
Gammaproteobacteria
Pseudoalteromonas sp. TB64 TB64 [AUTQ]
1898
1973
+
Ala
GGC
[ENA]
¡û
>W141087421
AUTR01000064
Gammaproteobacteria
Pseudoalteromonas sp. S8-8 [AUTR]
674
599
-
Ala
GGC
[ENA]
¡û
>W141087458
AUTS01000014
Gammaproteobacteria
Pseudoalteromonas sp. S8-38 [AUTS]
674
599
-
Ala
GGC
[ENA]
¡û
>WENV183057820
OLHM01007002
[OLHM] seawater metagenome; Sea water
1231
1306
+
Ala
GGC
[ENA]
¢þ
>WENV170024347
BCQL01045202
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
562
487
-
Ala
GGC
[ENA]
¢þ
>WENV170674224
LAZR01051831
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
626
551
-
Ala
GGC
[ENA]
¢þ
>C181010167
CP011025
Gammaproteobacteria
Pseudoalteromonas arctica A 37-1-2 [CP011025, CP011026]
2559655
2559580
-
Ala
GGC
-
¡û
>C181012547
CP012737
Gammaproteobacteria
Pseudoalteromonas sp. 1_2015MBL_MicDiv [CP012737, CP012738]
1329609
1329684
+
Ala
GGC
-
¡û
>C191051518
CP027523
Gammaproteobacteria
Pseudoalteromonas carrageenovora KCTC 22325 [CP027523, CP027524]
1244433
1244508
+
Ala
GGC
-
¡û
>C191179359
CP040558
Gammaproteobacteria
Pseudoalteromonas distincta 16-SW-7 [CP040558]
2164211
2164136
-
Ala
GGC
-
¡û
>W141621820
JJNY01000125
Gammaproteobacteria
Pseudoalteromonas sp. S3431 [JJNY]
2565
2640
+
Ala
GGC
[ENA]
¡û
>W141621875
JJNZ01000022
Gammaproteobacteria
Pseudoalteromonas fuliginea citrea [JJNZ]
333
258
-
Ala
GGC
[ENA]
¡û
>W1910182160
BJMQ01000125
Gammaproteobacteria
Pseudoalteromonas carrageenovora NBRC 12985 [BJMQ]
306
231
-
Ala
GGC
[ENA]
¡û
>W1810155663
PJAV01000166
Gammaproteobacteria
Pseudoalteromonas sp. 78C3 [PJAV]
87826
87901
+
Ala
GGC
[ENA]
¡û
>W1810156558
PJBK01000016
Gammaproteobacteria
Pseudoalteromonas sp. GutCa3 [PJBK]
88693
88768
+
Ala
GGC
[ENA]
¡û
>W1810156994
PJBQ01000018
Gammaproteobacteria
Pseudoalteromonas arctica MelAa3 [PJBQ]
1375
1450
+
Ala
GGC
[ENA]
¡û
>W1810157136
PJBR01000203
Gammaproteobacteria
Pseudoalteromonas sp. MelDa3 [PJBR]
340
265
-
Ala
GGC
[ENA]
¡û
>W1511399024
JTDZ01000006
Gammaproteobacteria
Pseudoalteromonas elyakovii NCIMB 2033 = ATCC BAA-314 [JTDZ]
194766
194841
+
Ala
GGC
[ENA]
¡û
>W11122004
ADOP01000129
Gammaproteobacteria
Pseudoalteromonas distincta ANT/505 [ADOP]
311
236
-
Ala
GGC
[ENA]
¡û
>W1511479576
JWIG01000025
Gammaproteobacteria
Pseudoalteromonas distincta ATCC 700518 [JWIG]
195570
195645
+
Ala
GGC
[ENA]
¡û
>W1511518573
JXYD01000027
Gammaproteobacteria
Pseudoalteromonas fuliginea S2292 [JXYD]
45066
45141
+
Ala
GGC
[ENA]
¡û
>C161052001
CP013138
Gammaproteobacteria
Pseudoalteromonas sp. Bsw20308 BSW20308 [CP013138]
2702234
2702159
-
Ala
GGC
-
¡û
>W121024825
AHBY01000040
Gammaproteobacteria
Pseudoalteromonas arctica A 37-1-2 [AHBY]
386
311
-
Ala
GGC
[ENA]
¡û
>W121123074
BADT01000258
Gammaproteobacteria
Pseudoalteromonas sp. BSi20652 [BADT]
1427
1502
+
Ala
GGC
[ENA]
¡û
>W121123207
BADV01000117
Gammaproteobacteria
Pseudoalteromonas sp. BSi20429 [BADV]
1278
1353
+
Ala
GGC
[ENA]
¡û
>W121123373
BADY01000130
Gammaproteobacteria
Pseudoalteromonas sp. BSi20495 [BADY]
1350
1425
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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