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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.483399 (31 seq.)
>C008051
CP000527
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris DP4 [CP000527]
341892
341967
+
Ala
TGC
[Ensembl]
¡û
>C008055
CP000527
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris DP4 [CP000527]
827790
827865
+
Ala
TGC
[Ensembl]
¡û
>C008059
CP000527
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris DP4 [CP000527]
961086
961161
+
Ala
TGC
[Ensembl]
¡û
>C008083
CP000527
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris DP4 [CP000527]
3358574
3358499
-
Ala
TGC
[Ensembl]
¡û
>C008085
CP000527
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris DP4 [CP000527]
3171980
3171905
-
Ala
TGC
[Ensembl]
¡û
>C008117
AE017285
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris str. Hildenborough [AE017285]
107614
107689
+
Ala
TGC
[Ensembl]
¡û
>C008119
AE017285
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris str. Hildenborough [AE017285]
296610
296685
+
Ala
TGC
[Ensembl]
¡û
>C008152
AE017285
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris str. Hildenborough [AE017285]
3250435
3250360
-
Ala
TGC
[Ensembl]
¡û
>C008156
AE017285
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris str. Hildenborough [AE017285]
2696041
2695966
-
Ala
TGC
[Ensembl]
¡û
>C008160
AE017285
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris str. Hildenborough [AE017285]
2562642
2562567
-
Ala
TGC
[Ensembl]
¡û
>WENV183306605
OLSX01086665
[OLSX] human gut metagenome; faeces
124
199
+
Ala
TGC
[ENA]
¢þ
>W09106220
AATW01000004
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris subsp. vulgaris DP4 [AATW]
133808
133733
-
Ala
TGC
[ENA]
¡û
>W09106224
AATW01000004
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris subsp. vulgaris DP4 [AATW]
512
437
-
Ala
TGC
[ENA]
¡û
>W09134104
ACQX01000066
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [ACQX]
1636
1711
+
Ala
TGC
[ENA]
¡û
>W1910182307
BJMT01000023
Thermodesulfobacteriota
Desulfovibrio desulfuricans NBRC 13699 [BJMT]
1812
1887
+
Ala
TGC
[ENA]
¡û
>C11107418
CP002297
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [CP002297]
149567
149642
+
Ala
TGC
[Ensembl]
¡û
>C11107420
CP002297
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [CP002297]
301175
301250
+
Ala
TGC
[Ensembl]
¡û
>C11107460
CP002297
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [CP002297]
3253574
3253499
-
Ala
TGC
[Ensembl]
¡û
>C11107464
CP002297
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [CP002297]
2699562
2699487
-
Ala
TGC
[Ensembl]
¡û
>C11107468
CP002297
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [CP002297]
2566163
2566088
-
Ala
TGC
[Ensembl]
¡û
>W1610550415
JXMS01000003
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
3476
3401
-
Ala
TGC
[ENA]
¡û
>W1610550445
JXMS01000007
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
129870
129795
-
Ala
TGC
[ENA]
¡û
>W1610550511
JXMS01000040
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
1814
1889
+
Ala
TGC
[ENA]
¡û
>W1610550513
JXMS01000045
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
1748
1823
+
Ala
TGC
[ENA]
¡û
>W1610550518
JXMS01000057
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
269
344
+
Ala
TGC
[ENA]
¡û
>ENV001360
AY780592
Environmental sample from ENV division of INSDC
155
232
+
Ala
TGC
[ENA]
>W1710660140
JXMS01000003
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
3476
3401
-
Ala
TGC
[ENA]
¡û
>W1710660170
JXMS01000007
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
129870
129795
-
Ala
TGC
[ENA]
¡û
>W1710660236
JXMS01000040
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
1814
1889
+
Ala
TGC
[ENA]
¡û
>W1710660238
JXMS01000045
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
1748
1823
+
Ala
TGC
[ENA]
¡û
>W1710660243
JXMS01000057
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
269
344
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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