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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.483474 (50 seq.)
>W1710923948
LOCN01000011
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
31235
31310
+
Phe
GAA
[ENA]
¡û
>W1710923950
LOCN01000011
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
31468
31543
+
Phe
GAA
[ENA]
¡û
>W1710923952
LOCN01000011
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
31680
31755
+
Phe
GAA
[ENA]
¡û
>W1710923954
LOCN01000011
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
31885
31960
+
Phe
GAA
[ENA]
¡û
>w027920
ABCQ01000012
Gammaproteobacteria
Moritella sp. PE36 [ABCQ]
101061
100984
-
Phe
GAA
[ENA]
¡û
>w027918
ABCQ01000012
Gammaproteobacteria
Moritella sp. PE36 [ABCQ]
101266
101189
-
Phe
GAA
[ENA]
¡û
>w027916
ABCQ01000012
Gammaproteobacteria
Moritella sp. PE36 [ABCQ]
101478
101401
-
Phe
GAA
[ENA]
¡û
>w027914
ABCQ01000012
Gammaproteobacteria
Moritella sp. PE36 [ABCQ]
101711
101634
-
Phe
GAA
[ENA]
¡û
>WENV170014359
AYRE01006535
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
212
137
-
Phe
GAA
[ENA]
¢þ
>C181204209
LS483250
Gammaproteobacteria
Moritella yayanosii DB21MT 5 [LS483250]
3469023
3468948
-
Phe
GAA
-
¡û
>C181204211
LS483250
Gammaproteobacteria
Moritella yayanosii DB21MT 5 [LS483250]
3468791
3468716
-
Phe
GAA
-
¡û
>C181204213
LS483250
Gammaproteobacteria
Moritella yayanosii DB21MT 5 [LS483250]
3468588
3468513
-
Phe
GAA
-
¡û
>C181204215
LS483250
Gammaproteobacteria
Moritella yayanosii DB21MT 5 [LS483250]
3468385
3468310
-
Phe
GAA
-
¡û
>W1910237505
FPLD01000065
Gammaproteobacteria
Moritella viscosa [FPLD]
101991
102066
+
Phe
GAA
[ENA]
¡û
>W1910237507
FPLD01000065
Gammaproteobacteria
Moritella viscosa [FPLD]
102224
102299
+
Phe
GAA
[ENA]
¡û
>W1910237584
FPLE01000073
Gammaproteobacteria
Moritella viscosa [FPLE]
82552
82627
+
Phe
GAA
[ENA]
¡û
>W1910237586
FPLE01000073
Gammaproteobacteria
Moritella viscosa [FPLE]
82785
82860
+
Phe
GAA
[ENA]
¡û
>W1910237663
FPLF01000076
Gammaproteobacteria
Moritella viscosa [FPLF]
100335
100410
+
Phe
GAA
[ENA]
¡û
>W1910237665
FPLF01000076
Gammaproteobacteria
Moritella viscosa [FPLF]
100568
100643
+
Phe
GAA
[ENA]
¡û
>W1910237905
FPLJ01000052
Gammaproteobacteria
Moritella viscosa [FPLJ]
159616
159691
+
Phe
GAA
[ENA]
¡û
>W1910237907
FPLJ01000052
Gammaproteobacteria
Moritella viscosa [FPLJ]
159849
159924
+
Phe
GAA
[ENA]
¡û
>W1910237909
FPLJ01000052
Gammaproteobacteria
Moritella viscosa [FPLJ]
160061
160136
+
Phe
GAA
[ENA]
¡û
>W1910237911
FPLJ01000052
Gammaproteobacteria
Moritella viscosa [FPLJ]
160266
160341
+
Phe
GAA
[ENA]
¡û
>W1910282729
FRDQ01000069
Gammaproteobacteria
Moritella viscosa [FRDQ]
14526
14601
+
Phe
GAA
[ENA]
¡û
>W1910282731
FRDQ01000069
Gammaproteobacteria
Moritella viscosa [FRDQ]
14759
14834
+
Phe
GAA
[ENA]
¡û
>W1910282733
FRDQ01000069
Gammaproteobacteria
Moritella viscosa [FRDQ]
14971
15046
+
Phe
GAA
[ENA]
¡û
>W1910282875
FRDS01000083
Gammaproteobacteria
Moritella viscosa [FRDS]
14525
14600
+
Phe
GAA
[ENA]
¡û
>W1910282877
FRDS01000083
Gammaproteobacteria
Moritella viscosa [FRDS]
14758
14833
+
Phe
GAA
[ENA]
¡û
>W1910282879
FRDS01000083
Gammaproteobacteria
Moritella viscosa [FRDS]
14970
15045
+
Phe
GAA
[ENA]
¡û
>W1910282946
FRDT01000068
Gammaproteobacteria
Moritella viscosa [FRDT]
14525
14600
+
Phe
GAA
[ENA]
¡û
>W1910282948
FRDT01000068
Gammaproteobacteria
Moritella viscosa [FRDT]
14758
14833
+
Phe
GAA
[ENA]
¡û
>W1910282950
FRDT01000068
Gammaproteobacteria
Moritella viscosa [FRDT]
14970
15045
+
Phe
GAA
[ENA]
¡û
>W1910282952
FRDT01000068
Gammaproteobacteria
Moritella viscosa [FRDT]
15175
15250
+
Phe
GAA
[ENA]
¡û
>W1910283031
FRDU01000083
Gammaproteobacteria
Moritella viscosa [FRDU]
14640
14715
+
Phe
GAA
[ENA]
¡û
>W1910283033
FRDU01000083
Gammaproteobacteria
Moritella viscosa [FRDU]
14873
14948
+
Phe
GAA
[ENA]
¡û
>W1910283103
FRDV01000094
Gammaproteobacteria
Moritella viscosa [FRDV]
99265
99340
+
Phe
GAA
[ENA]
¡û
>W1910283105
FRDV01000094
Gammaproteobacteria
Moritella viscosa [FRDV]
99498
99573
+
Phe
GAA
[ENA]
¡û
>W1910283107
FRDV01000094
Gammaproteobacteria
Moritella viscosa [FRDV]
99710
99785
+
Phe
GAA
[ENA]
¡û
>W1910283109
FRDV01000094
Gammaproteobacteria
Moritella viscosa [FRDV]
99915
99990
+
Phe
GAA
[ENA]
¡û
>W1910283184
FRDW01000046
Gammaproteobacteria
Moritella viscosa [FRDW]
148048
148123
+
Phe
GAA
[ENA]
¡û
>W1910283186
FRDW01000046
Gammaproteobacteria
Moritella viscosa [FRDW]
148281
148356
+
Phe
GAA
[ENA]
¡û
>W1910283188
FRDW01000046
Gammaproteobacteria
Moritella viscosa [FRDW]
148493
148568
+
Phe
GAA
[ENA]
¡û
>C151103122
LN554852
Gammaproteobacteria
Moritella viscosa [LN554852]
4718243
4718318
+
Phe
GAA
[Ensembl]
¡û
>C151103124
LN554852
Gammaproteobacteria
Moritella viscosa [LN554852]
4718476
4718551
+
Phe
GAA
[Ensembl]
¡û
>C151103126
LN554852
Gammaproteobacteria
Moritella viscosa [LN554852]
4718688
4718763
+
Phe
GAA
[Ensembl]
¡û
>C151103128
LN554852
Gammaproteobacteria
Moritella viscosa [LN554852]
4718893
4718968
+
Phe
GAA
[Ensembl]
¡û
>W1610781549
LOCN01000011
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
31235
31310
+
Phe
GAA
[ENA]
¡û
>W1610781551
LOCN01000011
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
31468
31543
+
Phe
GAA
[ENA]
¡û
>W1610781553
LOCN01000011
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
31680
31755
+
Phe
GAA
[ENA]
¡û
>W1610781555
LOCN01000011
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
31885
31960
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK