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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.483476 (58 seq.)
>W1710923949
LOCN01000011
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
31389
31464
+
Thr
TGT
[ENA]
¡û
>W1710923951
LOCN01000011
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
31601
31676
+
Thr
TGT
[ENA]
¡û
>W1710923953
LOCN01000011
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
31806
31881
+
Thr
TGT
[ENA]
¡û
>W1710923959
LOCN01000022
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
39180
39105
-
Thr
TGT
[ENA]
¡û
>W131179787
ARMR01000039
Gammaproteobacteria
Moritella marina ATCC 15381 [ARMR]
90133
90058
-
Thr
TGT
[ENA]
¡û
>W131179790
ARMR01000040
Gammaproteobacteria
Moritella marina ATCC 15381 [ARMR]
47264
47189
-
Thr
TGT
[ENA]
¡û
>W131179801
ARMR01000045
Gammaproteobacteria
Moritella marina ATCC 15381 [ARMR]
108871
108946
+
Thr
TGT
[ENA]
¡û
>w027948
ABCQ01000025
Gammaproteobacteria
Moritella sp. PE36 [ABCQ]
58964
59039
+
Thr
TGT
[ENA]
¡û
>w027919
ABCQ01000012
Gammaproteobacteria
Moritella sp. PE36 [ABCQ]
101140
101063
-
Thr
TGT
[ENA]
¡û
>w027917
ABCQ01000012
Gammaproteobacteria
Moritella sp. PE36 [ABCQ]
101345
101268
-
Thr
TGT
[ENA]
¡û
>w027915
ABCQ01000012
Gammaproteobacteria
Moritella sp. PE36 [ABCQ]
101557
101480
-
Thr
TGT
[ENA]
¡û
>WENV170014360
AYRE01006535
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
79
4
-
Thr
TGT
[ENA]
¢þ
>C181204210
LS483250
Gammaproteobacteria
Moritella yayanosii DB21MT 5 [LS483250]
3468870
3468795
-
Thr
TGT
-
¡û
>C181204212
LS483250
Gammaproteobacteria
Moritella yayanosii DB21MT 5 [LS483250]
3468667
3468592
-
Thr
TGT
-
¡û
>C181204214
LS483250
Gammaproteobacteria
Moritella yayanosii DB21MT 5 [LS483250]
3468464
3468389
-
Thr
TGT
-
¡û
>C181204238
LS483250
Gammaproteobacteria
Moritella yayanosii DB21MT 5 [LS483250]
2793710
2793635
-
Thr
TGT
-
¡û
>W1910237524
FPLD01000079
Gammaproteobacteria
Moritella viscosa [FPLD]
42713
42788
+
Thr
TGT
[ENA]
¡û
>W1910237585
FPLE01000073
Gammaproteobacteria
Moritella viscosa [FPLE]
82706
82781
+
Thr
TGT
[ENA]
¡û
>W1910237600
FPLE01000088
Gammaproteobacteria
Moritella viscosa [FPLE]
42619
42694
+
Thr
TGT
[ENA]
¡û
>W1910237664
FPLF01000076
Gammaproteobacteria
Moritella viscosa [FPLF]
100489
100564
+
Thr
TGT
[ENA]
¡û
>W1910237674
FPLF01000094
Gammaproteobacteria
Moritella viscosa [FPLF]
42614
42689
+
Thr
TGT
[ENA]
¡û
>W1910237738
FPLG01000099
Gammaproteobacteria
Moritella viscosa [FPLG]
42612
42687
+
Thr
TGT
[ENA]
¡û
>W1910237906
FPLJ01000052
Gammaproteobacteria
Moritella viscosa [FPLJ]
159770
159845
+
Thr
TGT
[ENA]
¡û
>W1910237908
FPLJ01000052
Gammaproteobacteria
Moritella viscosa [FPLJ]
159982
160057
+
Thr
TGT
[ENA]
¡û
>W1910237910
FPLJ01000052
Gammaproteobacteria
Moritella viscosa [FPLJ]
160187
160262
+
Thr
TGT
[ENA]
¡û
>W1910237929
FPLJ01000062
Gammaproteobacteria
Moritella viscosa [FPLJ]
42645
42720
+
Thr
TGT
[ENA]
¡û
>W1910281875
FQXZ01000015
Gammaproteobacteria
Vibrio aerogenes CECT 7868 [FQXZ]
333123
333198
+
Thr
TGT
[ENA]
¡û
>W1910282732
FRDQ01000069
Gammaproteobacteria
Moritella viscosa [FRDQ]
14892
14967
+
Thr
TGT
[ENA]
¡û
>W1910282750
FRDQ01000081
Gammaproteobacteria
Moritella viscosa [FRDQ]
42650
42725
+
Thr
TGT
[ENA]
¡û
>W1910282814
FRDR01000108
Gammaproteobacteria
Moritella viscosa [FRDR]
42626
42701
+
Thr
TGT
[ENA]
¡û
>W1910282878
FRDS01000083
Gammaproteobacteria
Moritella viscosa [FRDS]
14891
14966
+
Thr
TGT
[ENA]
¡û
>W1910282893
FRDS01000099
Gammaproteobacteria
Moritella viscosa [FRDS]
42647
42722
+
Thr
TGT
[ENA]
¡û
>W1910282949
FRDT01000068
Gammaproteobacteria
Moritella viscosa [FRDT]
14891
14966
+
Thr
TGT
[ENA]
¡û
>W1910282951
FRDT01000068
Gammaproteobacteria
Moritella viscosa [FRDT]
15096
15171
+
Thr
TGT
[ENA]
¡û
>W1910282969
FRDT01000087
Gammaproteobacteria
Moritella viscosa [FRDT]
42647
42722
+
Thr
TGT
[ENA]
¡û
>W1910283049
FRDU01000100
Gammaproteobacteria
Moritella viscosa [FRDU]
42647
42722
+
Thr
TGT
[ENA]
¡û
>W1910283104
FRDV01000094
Gammaproteobacteria
Moritella viscosa [FRDV]
99419
99494
+
Thr
TGT
[ENA]
¡û
>W1910283106
FRDV01000094
Gammaproteobacteria
Moritella viscosa [FRDV]
99631
99706
+
Thr
TGT
[ENA]
¡û
>W1910283108
FRDV01000094
Gammaproteobacteria
Moritella viscosa [FRDV]
99836
99911
+
Thr
TGT
[ENA]
¡û
>W1910283126
FRDV01000124
Gammaproteobacteria
Moritella viscosa [FRDV]
42625
42700
+
Thr
TGT
[ENA]
¡û
>W1910283185
FRDW01000046
Gammaproteobacteria
Moritella viscosa [FRDW]
148202
148277
+
Thr
TGT
[ENA]
¡û
>W1910283187
FRDW01000046
Gammaproteobacteria
Moritella viscosa [FRDW]
148414
148489
+
Thr
TGT
[ENA]
¡û
>W1910283204
FRDW01000055
Gammaproteobacteria
Moritella viscosa [FRDW]
42814
42889
+
Thr
TGT
[ENA]
¡û
>W1910285519
FRFG01000016
Gammaproteobacteria
Vibrio quintilis [FRFG]
64444
64369
-
Thr
TGT
[ENA]
¡û
>W1910285524
FRFG01000016
Gammaproteobacteria
Vibrio quintilis [FRFG]
63602
63527
-
Thr
TGT
[ENA]
¡û
>W1810157572
PJCA01000033
Gammaproteobacteria
Moritella sp. Urea-trap-13 [PJCA]
43098
43173
+
Thr
TGT
[ENA]
¡û
>W1810157613
PJCA01000039
Gammaproteobacteria
Moritella sp. Urea-trap-13 [PJCA]
169771
169846
+
Thr
TGT
[ENA]
¡û
>W1810157615
PJCA01000039
Gammaproteobacteria
Moritella sp. Urea-trap-13 [PJCA]
169983
170058
+
Thr
TGT
[ENA]
¡û
>C151103078
LN554852
Gammaproteobacteria
Moritella viscosa [LN554852]
246196
246271
+
Thr
TGT
[Ensembl]
¡û
>C151103123
LN554852
Gammaproteobacteria
Moritella viscosa [LN554852]
4718397
4718472
+
Thr
TGT
[Ensembl]
¡û
>C151103125
LN554852
Gammaproteobacteria
Moritella viscosa [LN554852]
4718609
4718684
+
Thr
TGT
[Ensembl]
¡û
>C151103127
LN554852
Gammaproteobacteria
Moritella viscosa [LN554852]
4718814
4718889
+
Thr
TGT
[Ensembl]
¡û
>W121102661
AKXQ01000011
Gammaproteobacteria
Moritella dasanensis ArB 0140 [AKXQ]
179259
179184
-
Thr
TGT
[ENA]
¡û
>W121102693
AKXQ01000018
Gammaproteobacteria
Moritella dasanensis ArB 0140 [AKXQ]
43099
43174
+
Thr
TGT
[ENA]
¡û
>W1610781550
LOCN01000011
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
31389
31464
+
Thr
TGT
[ENA]
¡û
>W1610781552
LOCN01000011
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
31601
31676
+
Thr
TGT
[ENA]
¡û
>W1610781554
LOCN01000011
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
31806
31881
+
Thr
TGT
[ENA]
¡û
>W1610781560
LOCN01000022
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
39180
39105
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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