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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.483604 (14 seq.)
>W1711709175
MSYP01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYP]
107064
107139
+
Lys
TTT
[ENA]
¡û
>W1711709270
MSYR01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYR]
3193500
3193575
+
Lys
TTT
[ENA]
¡û
>W131241999
BASI01000001
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [BASI]
861380
861305
-
Lys
TTT
[ENA]
¡û
>C171092113
CP019312
Alphaproteobacteria
Tateyamaria omphalii DOK1-4 [CP019312]
3205804
3205729
-
Lys
TTT
-
¡û
>WENV180105600
OAPD01112106
[OAPD] marine metagenome; 2010
224
149
-
Lys
TTT
[ENA]
¢þ
>W08005917
ABIG01000008
Alphaproteobacteria
Roseobacter litoralis Och 149 [ABIG]
174367
174295
-
Lys
TTT
[ENA]
¡û
>W1910548466
FZON01000047
Alphaproteobacteria
Antarctobacter heliothermus DSM 11445 [FZON]
30066
29991
-
Lys
TTT
[ENA]
¡û
>W1510000308
AQQZ01000002
Alphaproteobacteria
Pseudaestuariivita atlantica 22II-S11-z3 [AQQZ]
74736
74811
+
Lys
TTT
[ENA]
¡û
>C11118672
CP002623
Alphaproteobacteria
Roseobacter litoralis Och 149 [CP002623]
4083141
4083066
-
Lys
TTT
[Ensembl]
¡û
>W1511483004
JWLL01000005
Alphaproteobacteria
Tateyamaria sp. ANG-S1 [JWLL]
266430
266355
-
Lys
TTT
[ENA]
¡û
>C161001455
AP014800
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 2351 [AP014800]
4354472
4354397
-
Lys
TTT
[Ensembl]
¡û
>C161087748
CP015418
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [CP015418]
864841
864766
-
Lys
TTT
-
¡û
>C161087797
CP015421
Alphaproteobacteria
Rhodovulum sulfidophilum SNK001 [CP015421]
828961
828886
-
Lys
TTT
[Ensembl]
¡û
>WENV070434
AACY023808574
Marine microbial communities from Global Ocean Sampling (GOS)
1456
1379
-
Lys
TTT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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