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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.483698 (23 seq.)
>W1711043791
LRML01000006
Bacteroidota
Rufibacter roseus [LRML]
185354
185427
+
Thr
TGT
[ENA]
¡û
>W1711377604
MDZB01000109
Bacteroidota
Hymenobacter lapidarius CCM 8643 [MDZB]
68157
68230
+
Thr
TGT
[ENA]
¡û
>W1711377632
MDZC01000046
Bacteroidota
Hymenobacter glacialis CCM 8648 [MDZC]
232340
232413
+
Thr
TGT
[ENA]
¡û
>W131215981
ATVL01000008
Bacteroidota
Hymenobacter norwichensis DSM 15439 [ATVL]
2365
2292
-
Thr
TGT
[ENA]
¡û
>WENV170987796
MWVX01280450
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
421
348
-
Thr
TGT
[ENA]
¢þ
>WENV170988763
MWVY01003942
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
974
899
-
Thr
TGT
[ENA]
¢þ
>WENV170994413
MWWD01104340
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
33
106
+
Thr
TGT
[ENA]
¢þ
>WENV170994414
MWWD01104340
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
271
344
+
Thr
TGT
[ENA]
¢þ
>WENV170998996
MWWJ01198057
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
206
133
-
Thr
TGT
[ENA]
¢þ
>WENV170999187
MWWK01002748
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
1496
1423
-
Thr
TGT
[ENA]
¢þ
>C191154878
CP037922
Bacteroidota
Hymenobacter radiodurans 17J36-26 [CP037922]
2276632
2276705
+
Thr
TGT
-
¡û
>W141734728
JNLX01000165
Bacteroidota
Hymenobacter sp. IS2118 [JNLX]
19554
19629
+
Thr
TGT
[ENA]
¡û
>C151063989
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
2400541
2400616
+
Thr
TGT
[Ensembl]
¡û
>C151071872
CP010777
Bacteroidota
Rufibacter radiotolerans DG31D [CP010777]
1796476
1796549
+
Thr
TGT
[Ensembl]
¡û
>C151096226
CP012623
Bacteroidota
Hymenobacter sp. DG25A [CP012623]
1429721
1429648
-
Thr
TGT
-
¡û
>C161028430
CP010776
Bacteroidota
Rufibacter sp. DG15C [CP010776]
3484204
3484129
-
Thr
TGT
[Ensembl]
¡û
>C161043258
CP012643
Bacteroidota
Rufibacter tibetensis 1351 [CP012643]
4495892
4495965
+
Thr
TGT
[Ensembl]
¡û
>C161061555
CP013909
Bacteroidota
Hymenobacter sedentarius DG5B [CP013909]
3509835
3509908
+
Thr
TGT
[Ensembl]
¡û
>W1610885090
LRML01000006
Bacteroidota
Rufibacter roseus [LRML]
185354
185427
+
Thr
TGT
[ENA]
¡û
>W1710573721
FOXS01000001
Bacteroidota
Hymenobacter arizonensis [FOXS]
822927
823002
+
Thr
TGT
[ENA]
¡û
>W1710587480
FQYN01000007
Bacteroidota
Hymenobacter daecheongensis DSM 21074 [FQYN]
174868
174941
+
Thr
TGT
[ENA]
¡û
>W1710605428
FWWW01000091
Bacteroidota
Hymenobacter roseosalivarius DSM 11622 [FWWW]
103176
103249
+
Thr
TGT
[ENA]
¡û
>W1710610161
FYEW01000001
Bacteroidota
Hymenobacter gelipurpurascens [FYEW]
904797
904724
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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