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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.483745 (12 seq.)
>C171039368
CP015579
Gammaproteobacteria
Tatumella citrea DSM 13699 [CP015579]
526391
526466
+
Met
CAT
-
¡û
>C171039449
CP015581
Gammaproteobacteria
Tatumella citrea ATCC 39140 [CP015581]
526064
526139
+
Met
CAT
-
¡û
>W141215779
AZUK01000001
Gammaproteobacteria
Tolumonas lignilytica BRL6-1 [AZUK]
1100925
1101000
+
Met
CAT
[ENA]
¡û
>WENV170657582
JTFP01003451
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
224
149
-
Met
CAT
[ENA]
¢þ
>C181175849
CP029185
Gammaproteobacteria
Limnobaculum parvum HYN0051 [CP029185]
3092948
3093023
+
Met
CAT
-
¡û
>C191130369
CP034752
Gammaproteobacteria
Jinshanibacter zhutongyuii CF-458 [CP034752]
3507536
3507611
+
Met
CAT
-
¡û
>C191214351
LR134531
Gammaproteobacteria
Pragia fontium NCTC12284 [LR134531]
3277405
3277480
+
Met
CAT
-
¡û
>W09122165
ACFZ01000003
Gammaproteobacteria
Tolumonas auensis DSM 9187 [ACFZ]
13900
13825
-
Met
CAT
[ENA]
¡û
>W1910230309
FOLW01000003
Gammaproteobacteria
Pragia fontium DSM 5563 = ATCC 49100 [FOLW]
205509
205434
-
Met
CAT
[ENA]
¡û
>C09110528
CP001616
Gammaproteobacteria
Tolumonas auensis DSM 9187 [CP001616]
2925756
2925831
+
Met
CAT
[Ensembl]
¡û
>C151068501
CP010423
Gammaproteobacteria
Pragia fontium 24613 [CP010423]
3409601
3409676
+
Met
CAT
[Ensembl]
¡û
>W1511304539
JPKR02000004
Gammaproteobacteria
Tatumella morbirosei LMG 23360 [JPKR]
47460
47535
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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