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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.483757 (27 seq.)
>C171063401
CP017480
Gammaproteobacteria
Luteibacter rhizovicinus DSM 16549 LJ96 [CP017480]
15824
15749
-
Lys
CTT
-
¡û
>WENV170659764
JXWR01082593
[JXWR] soil metagenome; rice field; ambient CO2
89
14
-
Lys
CTT
[ENA]
¢þ
>C191186029
CP041046
Gammaproteobacteria
Luteibacter pinisoli MAH-14 [CP041046]
3033155
3033080
-
Lys
CTT
-
¡û
>W141820711
JQNB01000001
Gammaproteobacteria
Luteibacter sp. 9135 [JQNB]
4116281
4116206
-
Lys
CTT
[ENA]
¡û
>W141820789
JQND01000001
Gammaproteobacteria
Luteibacter sp. 9145 [JQND]
1660499
1660574
+
Lys
CTT
[ENA]
¡û
>W141821284
JQNL01000001
Gammaproteobacteria
Luteibacter sp. 9143a 9143 [JQNL]
706792
706717
-
Lys
CTT
[ENA]
¡û
>W1911199821
NRDP01000030
Gammaproteobacteria
Dyella sp. AD56 [NRDP]
33815
33740
-
Lys
CTT
[ENA]
¡û
>W1810477578
QAOX01000006
Gammaproteobacteria
Luteibacter sp. OK325 [QAOX]
289514
289439
-
Lys
CTT
[ENA]
¡û
>C151023751
CP007444
Gammaproteobacteria
Dyella jiangningensis SBZ3-12 [CP007444]
2417053
2416978
-
Lys
CTT
[Ensembl]
¡û
>C151039108
CP008884
Gammaproteobacteria
Dyella japonica A8 [CP008884]
3467672
3467597
-
Lys
CTT
[Ensembl]
¡û
>W1511305113
JPLB01000053
Gammaproteobacteria
Luteibacter rhizovicinus DSM 16549 [JPLB]
86829
86754
-
Lys
CTT
[ENA]
¡û
>W1511305283
JPLD01000306
Gammaproteobacteria
Xanthomonas hyacinthi DSM 19077 [JPLD]
5682
5757
+
Lys
CTT
[ENA]
¡û
>W1511433914
JUHO01000001
Gammaproteobacteria
Luteibacter sp. 9133 [JUHO]
2770777
2770702
-
Lys
CTT
[ENA]
¡û
>W1511547559
JZRB01000003
Gammaproteobacteria
Luteibacter yeojuensis SU11 [JZRB]
131877
131802
-
Lys
CTT
[ENA]
¡û
>C121011593
CP003350
Gammaproteobacteria
Frateuria aurantia DSM 6220 [CP003350]
1980554
1980479
-
Lys
CTT
[Ensembl]
¡û
>C121011596
CP003350
Gammaproteobacteria
Frateuria aurantia DSM 6220 [CP003350]
1980110
1980035
-
Lys
CTT
[Ensembl]
¡û
>C121011598
CP003350
Gammaproteobacteria
Frateuria aurantia DSM 6220 [CP003350]
1979782
1979707
-
Lys
CTT
[Ensembl]
¡û
>W121017565
AGRV01000013
Gammaproteobacteria
Frateuria aurantia DSM 6220 [AGRV]
720057
720132
+
Lys
CTT
[ENA]
¡û
>W121017568
AGRV01000013
Gammaproteobacteria
Frateuria aurantia DSM 6220 [AGRV]
720501
720576
+
Lys
CTT
[ENA]
¡û
>W121017570
AGRV01000013
Gammaproteobacteria
Frateuria aurantia DSM 6220 [AGRV]
720829
720904
+
Lys
CTT
[ENA]
¡û
>W121113879
ALOY01000118
Gammaproteobacteria
Dyella japonica A8 [ALOY]
12750
12675
-
Lys
CTT
[ENA]
¡û
>W1710515257
FNBR01000001
Gammaproteobacteria
Dyella sp. 333MFSha [FNBR]
513678
513753
+
Lys
CTT
[ENA]
¡û
>W1710545806
FOBU01000002
Gammaproteobacteria
Luteibacter sp. UNCMF331Sha3.1 [FOBU]
841436
841511
+
Lys
CTT
[ENA]
¡û
>W1710548711
FODZ01000003
Gammaproteobacteria
Luteibacter sp. UNC138MFCol5.1 [FODZ]
376113
376038
-
Lys
CTT
[ENA]
¡û
>W1710555212
FOJE01000001
Gammaproteobacteria
Luteibacter sp. 329MFSha [FOJE]
1678525
1678450
-
Lys
CTT
[ENA]
¡û
>W1710579657
FPIS01000001
Gammaproteobacteria
Luteibacter sp. UNCMF366Tsu5.1 [FPIS]
1147168
1147093
-
Lys
CTT
[ENA]
¡û
>W1710603051
FUYT01000005
Gammaproteobacteria
Luteibacter sp. 22Crub2.1 [FUYT]
228708
228633
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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