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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.484342 (88 seq.)
>W1711136990
LVAU01000142
Bacillota
Clostridiales bacterium Firm_15 [LVAU]
2694
2621
-
Cys
GCA
[ENA]
¡û
>W1711308469
MAPZ01000026
Bacillota
Clostridium paraputrificum [MAPZ]
184278
184205
-
Cys
GCA
[ENA]
¡û
>W131232286
AUJC01000017
Bacillota
Clostridium paraputrificum AGR2156 [AUJC]
29269
29196
-
Cys
GCA
[ENA]
¡û
>W131252534
CBML010000009
Bacillota
Clostridium chauvoei JF4335 [CBML]
4
77
+
Cys
GCA
[ENA]
¡û
>C171131118
LT799839
Bacillota
Clostridium chauvoei JF4335 [LT799839]
197219
197292
+
Cys
GCA
-
¡û
>WENV180122580
OASU01002933
[OASU] human gut metagenome; faeces
2059
1986
-
Cys
GCA
[ENA]
¢þ
>WENV180486283
OBZL01000242
[OBZL] human gut metagenome; faeces
7631
7558
-
Cys
GCA
[ENA]
¢þ
>WENV181219414
OFCO01001118
[OFCO] metagenome; Human gut stool
1805
1732
-
Cys
GCA
[ENA]
¢þ
>WENV181220347
OFCQ01001940
[OFCQ] metagenome; Human gut stool
487
560
+
Cys
GCA
[ENA]
¢þ
>WENV181220618
OFCR01004577
[OFCR] metagenome; Human gut stool
716
643
-
Cys
GCA
[ENA]
¢þ
>WENV181221556
OFCV01005412
[OFCV] metagenome; Human gut stool
679
606
-
Cys
GCA
[ENA]
¢þ
>WENV181226002
OFDJ01005144
[OFDJ] metagenome; Human gut stool
59
132
+
Cys
GCA
[ENA]
¢þ
>WENV181798831
OGRX01000412
[OGRX] human gut metagenome; fecal sample 2 from infant 8
535
608
+
Cys
GCA
[ENA]
¢þ
>WENV181801914
OGSC01000326
[OGSC] human gut metagenome; fecal sample 8 from infant 5
398
471
+
Cys
GCA
[ENA]
¢þ
>WENV181804334
OGSF01000103
[OGSF] human gut metagenome; fecal sample 3 from infant 5
269
342
+
Cys
GCA
[ENA]
¢þ
>WENV181805082
OGSH01000534
[OGSH] human gut metagenome; fecal sample 5 from infant 6
16847
16774
-
Cys
GCA
[ENA]
¢þ
>WENV181805367
OGSI01000226
[OGSI] human gut metagenome; fecal sample 4 from infant 8
145
218
+
Cys
GCA
[ENA]
¢þ
>WENV181805823
OGSJ01000657
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
16845
16772
-
Cys
GCA
[ENA]
¢þ
>WENV181806231
OGSK01000298
[OGSK] human gut metagenome; fecal sample 2 from infant 5
312
385
+
Cys
GCA
[ENA]
¢þ
>WENV181807326
OGSO01000116
[OGSO] human gut metagenome; fecal sample 3 from infant 6
312
385
+
Cys
GCA
[ENA]
¢þ
>WENV181808218
OGSR01000178
[OGSR] human gut metagenome; fecal sample 8 from infant 2
312
385
+
Cys
GCA
[ENA]
¢þ
>WENV181809508
OGST01000369
[OGST] human gut metagenome; fecal sample 7 from infant 6
398
471
+
Cys
GCA
[ENA]
¢þ
>WENV181810058
OGSU01000450
[OGSU] human gut metagenome; fecal sample 7 from infant 5
142
215
+
Cys
GCA
[ENA]
¢þ
>WENV181810994
OGSX01000507
[OGSX] human gut metagenome; fecal sample 1 from infant 8
535
608
+
Cys
GCA
[ENA]
¢þ
>WENV181811293
OGSY01000559
[OGSY] human gut metagenome; fecal sample 5 from infant 8
142
215
+
Cys
GCA
[ENA]
¢þ
>WENV181811739
OGSZ01000954
[OGSZ] human gut metagenome; fecal sample 3 from infant 8
2586
2659
+
Cys
GCA
[ENA]
¢þ
>WENV181814766
OGTH01000237
[OGTH] human gut metagenome; fecal sample 4 from infant 6
276
349
+
Cys
GCA
[ENA]
¢þ
>WENV181821283
OGUE01000289
[OGUE] human gut metagenome; fecal sample 1 from infant 5
312
385
+
Cys
GCA
[ENA]
¢þ
>WENV181834502
OGUR01001083
[OGUR] metagenome; Human gut stool
7939
7866
-
Cys
GCA
[ENA]
¢þ
>WENV182108836
OHIM01001932
[OHIM] human gut metagenome; feces
7653
7580
-
Cys
GCA
[ENA]
¢þ
>WENV182159406
OHMA01010629
[OHMA] human gut metagenome; feces
37
110
+
Cys
GCA
[ENA]
¢þ
>WENV182407489
OIFD01000047
[OIFD] human gut metagenome; stool
81
154
+
Cys
GCA
[ENA]
¢þ
>WENV182409612
OIFJ01000044
[OIFJ] human gut metagenome; stool
81
154
+
Cys
GCA
[ENA]
¢þ
>WENV182410120
OIFK01000093
[OIFK] human gut metagenome; stool
81
154
+
Cys
GCA
[ENA]
¢þ
>WENV182410807
OIFM01000067
[OIFM] human gut metagenome; stool
81
154
+
Cys
GCA
[ENA]
¢þ
>WENV182411755
OIFQ01000028
[OIFQ] human gut metagenome; stool
81
154
+
Cys
GCA
[ENA]
¢þ
>WENV182673410
OJNO01010116
[OJNO] human gut metagenome; human gut
525
452
-
Cys
GCA
[ENA]
¢þ
>WENV182807427
OJVW01001629
[OJVW] human gut metagenome; human gut
145
218
+
Cys
GCA
[ENA]
¢þ
>WENV182809752
OJWS01000319
[OJWS] human gut metagenome; human gut
6357
6430
+
Cys
GCA
[ENA]
¢þ
>WENV182814846
OJYN01000643
[OJYN] human gut metagenome; human gut
84
11
-
Cys
GCA
[ENA]
¢þ
>WENV182815047
OJYO01000484
[OJYO] human gut metagenome; human gut
6698
6771
+
Cys
GCA
[ENA]
¢þ
>WENV182822966
OKBP01002680
[OKBP] human gut metagenome; human gut
326
399
+
Cys
GCA
[ENA]
¢þ
>WENV182827661
OKDB01002657
[OKDB] human gut metagenome; human gut
1383
1310
-
Cys
GCA
[ENA]
¢þ
>WENV182828036
OKDE01002730
[OKDE] human gut metagenome; human gut
1663
1590
-
Cys
GCA
[ENA]
¢þ
>WENV182832930
OKEP01001901
[OKEP] human gut metagenome; human gut
11
84
+
Cys
GCA
[ENA]
¢þ
>WENV182838522
OKGS01003168
[OKGS] human gut metagenome; human gut
530
603
+
Cys
GCA
[ENA]
¢þ
>WENV182840186
OKHK01000942
[OKHK] human gut metagenome; human gut
2238
2165
-
Cys
GCA
[ENA]
¢þ
>WENV182844362
OKIR01003480
[OKIR] human gut metagenome; human gut
1664
1591
-
Cys
GCA
[ENA]
¢þ
>WENV182844999
OKIY01001986
[OKIY] human gut metagenome; human gut
206
279
+
Cys
GCA
[ENA]
¢þ
>WENV182855805
OKNE01001222
[OKNE] human gut metagenome; human gut
1585
1512
-
Cys
GCA
[ENA]
¢þ
>WENV182856316
OKNK01000152
[OKNK] human gut metagenome; human gut
4563
4636
+
Cys
GCA
[ENA]
¢þ
>WENV182856685
OKNP01001782
[OKNP] human gut metagenome; human gut
301
374
+
Cys
GCA
[ENA]
¢þ
>WENV182858034
OKOB01006478
[OKOB] human gut metagenome; human gut
448
521
+
Cys
GCA
[ENA]
¢þ
>WENV182863534
OKPT01001620
[OKPT] human gut metagenome; human gut
529
602
+
Cys
GCA
[ENA]
¢þ
>WENV182865052
OKQH01001060
[OKQH] human gut metagenome; human gut
1625
1552
-
Cys
GCA
[ENA]
¢þ
>WENV182954851
OKWB01000038
[OKWB] human gut metagenome; stool
81
154
+
Cys
GCA
[ENA]
¢þ
>WENV182958905
OKWI01000039
[OKWI] human gut metagenome; stool
81
154
+
Cys
GCA
[ENA]
¢þ
>WENV182961088
OKWK01000157
[OKWK] human gut metagenome; stool
68004
67931
-
Cys
GCA
[ENA]
¢þ
>WENV182961602
OKWL01000089
[OKWL] human gut metagenome; stool
116188
116115
-
Cys
GCA
[ENA]
¢þ
>WENV182962089
OKWN01000026
[OKWN] human gut metagenome; stool
505
578
+
Cys
GCA
[ENA]
¢þ
>WENV182962682
OKWO01000029
[OKWO] human gut metagenome; stool
81
154
+
Cys
GCA
[ENA]
¢þ
>WENV182963398
OKWQ01000221
[OKWQ] human gut metagenome; stool
33
106
+
Cys
GCA
[ENA]
¢þ
>WENV182965658
OKWT01000026
[OKWT] human gut metagenome; stool
165763
165690
-
Cys
GCA
[ENA]
¢þ
>WENV182967131
OKWZ01000016
[OKWZ] human gut metagenome; stool
81
154
+
Cys
GCA
[ENA]
¢þ
>WENV183087269
OLJG01001048
[OLJG] human gut metagenome; human gut
1587
1514
-
Cys
GCA
[ENA]
¢þ
>WENV183238263
OLQY01015987
[OLQY] human gut metagenome; faeces
1582
1509
-
Cys
GCA
[ENA]
¢þ
>C181031797
CP018624
Bacillota
Clostridium chauvoei DSM 7528 [CP018624]
2426169
2426096
-
Cys
GCA
-
¡û
>C181031968
CP018630
Bacillota
Clostridium chauvoei 12S0467 [CP018630]
196808
196881
+
Cys
GCA
-
¡û
>C191012381
CP016786
Bacillota
Clostridium isatidis DSM 15098 [CP016786]
202475
202548
+
Cys
GCA
-
¡û
>C191012442
CP016786
Bacillota
Clostridium isatidis DSM 15098 [CP016786]
797718
797648
-
Cys
GCA
-
¡û
>C191025608
CP023671
Bacillota
Clostridium septicum DSM 7534 [CP023671]
1961922
1961995
+
Cys
GCA
-
¡û
>C191051234
CP027286
Bacillota
Clostridium chauvoei SBP 07/09 [CP027286]
197219
197292
+
Cys
GCA
-
¡û
>C191123803
CP034358
Bacillota
Clostridium septicum VAT12 [CP034358]
746657
746730
+
Cys
GCA
-
¡û
>W1911493649
OBIP01000015
Bacillota
Clostridium paraputrificum LH141 [OBIP]
202
275
+
Cys
GCA
[ENA]
¡û
>W1911493699
OBIQ01000022
Bacillota
Clostridium paraputrificum LH058 [OBIQ]
411
484
+
Cys
GCA
[ENA]
¡û
>W1911493903
OBJN01000016
Bacillota
Clostridium paraputrificum LH025 [OBJN]
202
275
+
Cys
GCA
[ENA]
¡û
>W1810604901
QGMT01000043
Bacillota
Clostridium paraputrificum Gcol.A11 [QGMT]
16655
16582
-
Cys
GCA
[ENA]
¡û
>W1511445749
JUWA01000191
Bacillota
Clostridium botulinum 713_CBOT [JUWA]
29015
28942
-
Cys
GCA
[ENA]
¡û
>W1610101725
CYZW01000018
Bacillota
Clostridium paraputrificum [CYZW]
329
402
+
Cys
GCA
[ENA]
¡û
>W1610104366
CZBQ01000019
Bacillota
Clostridium paraputrificum [CZBQ]
43928
43855
-
Cys
GCA
[ENA]
¡û
>W1610507150
FLSO01000009
Bacillota
Clostridium mediterraneense Marseille-P2434 [FLSO]
12380
12453
+
Cys
GCA
[ENA]
¡û
>W1610507763
FLTT01000036
Bacillota
Clostridium septicum [FLTT]
442
515
+
Cys
GCA
[ENA]
¡û
>W1610948110
LVAU01000142
Bacillota
Clostridiales bacterium Firm_15 [LVAU]
2694
2621
-
Cys
GCA
[ENA]
¡û
>W1611056128
MAPZ01000026
Bacillota
Clostridium paraputrificum [MAPZ]
184278
184205
-
Cys
GCA
[ENA]
¡û
>W1710104480
CYZW01000018
Bacillota
Clostridium paraputrificum [CYZW]
329
402
+
Cys
GCA
[ENA]
¡û
>W1710107070
CZBQ01000019
Bacillota
Clostridium paraputrificum [CZBQ]
43928
43855
-
Cys
GCA
[ENA]
¡û
>W1710499368
FLSO01000009
Bacillota
Clostridium mediterraneense Marseille-P2434 [FLSO]
12380
12453
+
Cys
GCA
[ENA]
¡û
>W1710499981
FLTT01000036
Bacillota
Clostridium septicum [FLTT]
442
515
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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