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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.485096 (111 seq.)
>W1710821463
LKTL01000005
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
838
763
-
Gly
GCC
[ENA]
¡û
>W1710821464
LKTL01000005
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
671
596
-
Gly
GCC
[ENA]
¡û
>W1710821465
LKTL01000005
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
503
428
-
Gly
GCC
[ENA]
¡û
>W1710821466
LKTL01000005
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
404
329
-
Gly
GCC
[ENA]
¡û
>W1711027051
LRDC01000002
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
45347
45272
-
Gly
GCC
[ENA]
¡û
>W1711027052
LRDC01000002
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
45178
45103
-
Gly
GCC
[ENA]
¡û
>W1711027053
LRDC01000002
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
44998
44923
-
Gly
GCC
[ENA]
¡û
>W1711273466
LZFV01000024
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
290858
290933
+
Gly
GCC
[ENA]
¡û
>W1711273467
LZFV01000024
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
291025
291100
+
Gly
GCC
[ENA]
¡û
>W1711273468
LZFV01000024
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
291193
291268
+
Gly
GCC
[ENA]
¡û
>W1711624563
MPHK01000006
Gammaproteobacteria
Shewanella sp. UCD-KL21 [MPHK]
39659
39584
-
Gly
GCC
[ENA]
¡û
>W1711624564
MPHK01000006
Gammaproteobacteria
Shewanella sp. UCD-KL21 [MPHK]
39561
39486
-
Gly
GCC
[ENA]
¡û
>W1711624565
MPHK01000006
Gammaproteobacteria
Shewanella sp. UCD-KL21 [MPHK]
39394
39319
-
Gly
GCC
[ENA]
¡û
>W1711624566
MPHK01000006
Gammaproteobacteria
Shewanella sp. UCD-KL21 [MPHK]
39288
39213
-
Gly
GCC
[ENA]
¡û
>C171108600
CP020472
Gammaproteobacteria
Shewanella japonica KCTC 22435 [CP020472]
4230146
4230071
-
Gly
GCC
-
¡û
>C171108601
CP020472
Gammaproteobacteria
Shewanella japonica KCTC 22435 [CP020472]
4229979
4229904
-
Gly
GCC
-
¡û
>C171108602
CP020472
Gammaproteobacteria
Shewanella japonica KCTC 22435 [CP020472]
4229811
4229736
-
Gly
GCC
-
¡û
>C171108603
CP020472
Gammaproteobacteria
Shewanella japonica KCTC 22435 [CP020472]
4229712
4229637
-
Gly
GCC
-
¡û
>C022003
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
3963516
3963441
-
Gly
GCC
[Ensembl]
¡û
>C022004
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
3963347
3963272
-
Gly
GCC
[Ensembl]
¡û
>C022005
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
3963168
3963093
-
Gly
GCC
[Ensembl]
¡û
>WENV180585258
OCOK01072034
[OCOK] marine metagenome; ENVO:00002010
167
92
-
Gly
GCC
[ENA]
¢þ
>WENV170023827
BCQL01005228
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
2901
2826
-
Gly
GCC
[ENA]
¢þ
>WENV170024243
BCQL01032178
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
245
170
-
Gly
GCC
[ENA]
¢þ
>WENV170024244
BCQL01032178
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
78
3
-
Gly
GCC
[ENA]
¢þ
>C191117224
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
4349443
4349368
-
Gly
GCC
-
¡û
>C191117225
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
4349239
4349164
-
Gly
GCC
-
¡û
>C191117226
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
4349034
4348959
-
Gly
GCC
-
¡û
>C191156015
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
4778097
4778022
-
Gly
GCC
-
¡û
>C191156016
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
4777993
4777918
-
Gly
GCC
-
¡û
>C191156017
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
4777887
4777812
-
Gly
GCC
-
¡û
>C191173193
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
2925503
2925578
+
Gly
GCC
-
¡û
>C191173194
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
2925601
2925676
+
Gly
GCC
-
¡û
>C191173195
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
2925700
2925775
+
Gly
GCC
-
¡û
>C191185871
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
3958317
3958242
-
Gly
GCC
-
¡û
>C191185872
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
3958147
3958072
-
Gly
GCC
-
¡û
>C191185873
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
3958049
3957974
-
Gly
GCC
-
¡û
>W09103124
AAIV01000031
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
952
877
-
Gly
GCC
[ENA]
¡û
>W09103125
AAIV01000031
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
783
708
-
Gly
GCC
[ENA]
¡û
>W09103126
AAIV01000031
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
604
529
-
Gly
GCC
[ENA]
¡û
>W1910676722
MCTV01000013
Gammaproteobacteria
Shewanella sp. 10N.286.52.C2 [MCTV]
77321
77396
+
Gly
GCC
[ENA]
¡û
>W1910676723
MCTV01000013
Gammaproteobacteria
Shewanella sp. 10N.286.52.C2 [MCTV]
77489
77564
+
Gly
GCC
[ENA]
¡û
>W1910676724
MCTV01000013
Gammaproteobacteria
Shewanella sp. 10N.286.52.C2 [MCTV]
77655
77730
+
Gly
GCC
[ENA]
¡û
>W1910676725
MCTV01000013
Gammaproteobacteria
Shewanella sp. 10N.286.52.C2 [MCTV]
77761
77836
+
Gly
GCC
[ENA]
¡û
>W1910676959
MCTY01000190
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
393
318
-
Gly
GCC
[ENA]
¡û
>W1910676960
MCTY01000190
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
295
220
-
Gly
GCC
[ENA]
¡û
>W1910676961
MCTY01000190
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
197
122
-
Gly
GCC
[ENA]
¡û
>W1910676962
MCTY01000190
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
91
16
-
Gly
GCC
[ENA]
¡û
>W1910677498
MCUF01000061
Gammaproteobacteria
Shewanella sp. 10N.286.51.B7 [MCUF]
1
76
+
Gly
GCC
[ENA]
¡û
>W1910677499
MCUF01000061
Gammaproteobacteria
Shewanella sp. 10N.286.51.B7 [MCUF]
173
248
+
Gly
GCC
[ENA]
¡û
>W1910677500
MCUF01000061
Gammaproteobacteria
Shewanella sp. 10N.286.51.B7 [MCUF]
341
416
+
Gly
GCC
[ENA]
¡û
>W1910677501
MCUF01000061
Gammaproteobacteria
Shewanella sp. 10N.286.51.B7 [MCUF]
440
515
+
Gly
GCC
[ENA]
¡û
>W1910679522
MCVG01000141
Gammaproteobacteria
Shewanella sp. 10N.286.48.B5 [MCVG]
41054
40979
-
Gly
GCC
[ENA]
¡û
>W1910679523
MCVG01000141
Gammaproteobacteria
Shewanella sp. 10N.286.48.B5 [MCVG]
39949
39874
-
Gly
GCC
[ENA]
¡û
>W1910679524
MCVG01000141
Gammaproteobacteria
Shewanella sp. 10N.286.48.B5 [MCVG]
39843
39768
-
Gly
GCC
[ENA]
¡û
>W1910679632
MCVI01000001
Gammaproteobacteria
Shewanella sp. 10N.286.48.A6 [MCVI]
320
245
-
Gly
GCC
[ENA]
¡û
>W1911581963
PGVH01000056
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
457190
457115
-
Gly
GCC
[ENA]
¡û
>W1911581964
PGVH01000056
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
457095
457020
-
Gly
GCC
[ENA]
¡û
>W1911581965
PGVH01000056
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
457000
456925
-
Gly
GCC
[ENA]
¡û
>W1911710089
QPQU01000002
Gammaproteobacteria
Shewanella japonica KCTC 12235 [QPQU]
256561
256636
+
Gly
GCC
[ENA]
¡û
>W1911710091
QPQU01000002
Gammaproteobacteria
Shewanella japonica KCTC 12235 [QPQU]
256896
256971
+
Gly
GCC
[ENA]
¡û
>W1911710092
QPQU01000002
Gammaproteobacteria
Shewanella japonica KCTC 12235 [QPQU]
256995
257070
+
Gly
GCC
[ENA]
¡û
>W1911809492
QYYH01000069
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
22428
22353
-
Gly
GCC
[ENA]
¡û
>W1911809493
QYYH01000069
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
22324
22249
-
Gly
GCC
[ENA]
¡û
>W1911809494
QYYH01000069
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
22218
22143
-
Gly
GCC
[ENA]
¡û
>W1810155917
PJAZ01000051
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
49375
49300
-
Gly
GCC
[ENA]
¡û
>W1810155936
PJAZ01000056
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
118884
118809
-
Gly
GCC
[ENA]
¡û
>W1810155957
PJAZ01000069
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
61843
61768
-
Gly
GCC
[ENA]
¡û
>W1810155958
PJAZ01000069
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
61637
61562
-
Gly
GCC
[ENA]
¡û
>W1810155959
PJAZ01000069
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
61432
61357
-
Gly
GCC
[ENA]
¡û
>W1810155960
PJAZ01000069
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
61223
61148
-
Gly
GCC
[ENA]
¡û
>W1810155961
PJAZ01000069
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
61014
60939
-
Gly
GCC
[ENA]
¡û
>W1810155962
PJAZ01000069
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
60843
60768
-
Gly
GCC
[ENA]
¡û
>W1810156251
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
1339736
1339811
+
Gly
GCC
[ENA]
¡û
>W1810156264
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
3017138
3017063
-
Gly
GCC
[ENA]
¡û
>W1810156265
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
3016932
3016857
-
Gly
GCC
[ENA]
¡û
>W1810156266
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
3016727
3016652
-
Gly
GCC
[ENA]
¡û
>W1810156267
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
3016518
3016443
-
Gly
GCC
[ENA]
¡û
>W1810156268
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
3016309
3016234
-
Gly
GCC
[ENA]
¡û
>W1810156269
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
3016138
3016063
-
Gly
GCC
[ENA]
¡û
>W1810156282
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
1637267
1637192
-
Gly
GCC
[ENA]
¡û
>W1810156696
PJBL01000020
Gammaproteobacteria
Shewanella sp. GutCb [PJBL]
141448
141523
+
Gly
GCC
[ENA]
¡û
>W1810156697
PJBL01000020
Gammaproteobacteria
Shewanella sp. GutCb [PJBL]
141654
141729
+
Gly
GCC
[ENA]
¡û
>W1810156698
PJBL01000020
Gammaproteobacteria
Shewanella sp. GutCb [PJBL]
141778
141853
+
Gly
GCC
[ENA]
¡û
>W1810156699
PJBL01000020
Gammaproteobacteria
Shewanella sp. GutCb [PJBL]
141987
142062
+
Gly
GCC
[ENA]
¡û
>W1810156700
PJBL01000020
Gammaproteobacteria
Shewanella sp. GutCb [PJBL]
142196
142271
+
Gly
GCC
[ENA]
¡û
>W1810156701
PJBL01000020
Gammaproteobacteria
Shewanella sp. GutCb [PJBL]
142367
142442
+
Gly
GCC
[ENA]
¡û
>W1810156728
PJBL01000086
Gammaproteobacteria
Shewanella sp. GutCb [PJBL]
22
97
+
Gly
GCC
[ENA]
¡û
>W1810156747
PJBM01000090
Gammaproteobacteria
Shewanella sp. GutDb-MelDb [PJBM]
364
289
-
Gly
GCC
[ENA]
¡û
>W1810156796
PJBM01000259
Gammaproteobacteria
Shewanella sp. GutDb-MelDb [PJBM]
63847
63772
-
Gly
GCC
[ENA]
¡û
>W1810156797
PJBM01000259
Gammaproteobacteria
Shewanella sp. GutDb-MelDb [PJBM]
63643
63568
-
Gly
GCC
[ENA]
¡û
>W1810156798
PJBM01000259
Gammaproteobacteria
Shewanella sp. GutDb-MelDb [PJBM]
63519
63444
-
Gly
GCC
[ENA]
¡û
>W1810156799
PJBM01000259
Gammaproteobacteria
Shewanella sp. GutDb-MelDb [PJBM]
63310
63235
-
Gly
GCC
[ENA]
¡û
>W1810156800
PJBM01000259
Gammaproteobacteria
Shewanella sp. GutDb-MelDb [PJBM]
63101
63026
-
Gly
GCC
[ENA]
¡û
>W1810156801
PJBM01000259
Gammaproteobacteria
Shewanella sp. GutDb-MelDb [PJBM]
62930
62855
-
Gly
GCC
[ENA]
¡û
>W1810157733
PJCD01000001
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
598093
598168
+
Gly
GCC
[ENA]
¡û
>W1810157734
PJCD01000001
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
598205
598280
+
Gly
GCC
[ENA]
¡û
>W1810157735
PJCD01000001
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
598303
598378
+
Gly
GCC
[ENA]
¡û
>W1810157853
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
3969435
3969510
+
Gly
GCC
[ENA]
¡û
>W1810157854
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
3969689
3969764
+
Gly
GCC
[ENA]
¡û
>W1810157855
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
3969801
3969876
+
Gly
GCC
[ENA]
¡û
>W1610685425
LKTL01000005
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
838
763
-
Gly
GCC
[ENA]
¡û
>W1610685426
LKTL01000005
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
671
596
-
Gly
GCC
[ENA]
¡û
>W1610685427
LKTL01000005
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
503
428
-
Gly
GCC
[ENA]
¡û
>W1610685428
LKTL01000005
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
404
329
-
Gly
GCC
[ENA]
¡û
>W1610875163
LRDC01000002
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
45347
45272
-
Gly
GCC
[ENA]
¡û
>W1610875164
LRDC01000002
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
45178
45103
-
Gly
GCC
[ENA]
¡û
>W1610875165
LRDC01000002
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
44998
44923
-
Gly
GCC
[ENA]
¡û
>W1611032815
LZFV01000024
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
290858
290933
+
Gly
GCC
[ENA]
¡û
>W1611032816
LZFV01000024
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
291025
291100
+
Gly
GCC
[ENA]
¡û
>W1611032817
LZFV01000024
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
291193
291268
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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