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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.485115 (24 seq.)
>W1711065301
LSBR01000559
Gammaproteobacteria
Escherichia coli [LSBR]
7699
7774
+
Pro
GGG
[ENA]
¡û
>W1711428057
MIGD01000006
Gammaproteobacteria
Escherichia coli [MIGD]
340781
340706
-
Pro
GGG
[ENA]
¡û
>PL171000843
CP011865
Gammaproteobacteria
Enterobacter asburiae ATCC 35953 plasmid:unnamed 2
11164
11089
-
Pro
GGG
[ENA]
¡û
>W08011793
CAAS01004303
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhi str. E01-6750 [CAAS]
1493
1421
-
Pro
GGG
[ENA]
¡û
>WENV170000334
AEWW01014402
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
389
314
-
Pro
GGG
[ENA]
¢þ
>C181140270
CP026780
Gammaproteobacteria
Shigella dysenteriae 53-3937 [CP026780]
683013
682938
-
Pro
GGG
-
¡û
>C181142979
CP026845
Gammaproteobacteria
Shigella boydii NCTC 9733 [CP026845]
1288431
1288506
+
Pro
GGG
-
¡û
>C181198712
CP031282
Gammaproteobacteria
Escherichia fergusonii 40A [CP031282]
778088
778013
-
Pro
GGG
-
¡û
>C181217211
LS483493
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Thompson NCTC8496 [LS483493]
1650079
1650004
-
Pro
GGG
-
¡û
>C191196967
LR134145
Gammaproteobacteria
Salmonella enterica subsp. enterica NCTC6017 [LR134145]
1616614
1616539
-
Pro
GGG
-
¡û
>C191197296
LR134149
Gammaproteobacteria
Salmonella enterica subsp. enterica NCTC8272 [LR134149]
500657
500582
-
Pro
GGG
-
¡û
>C191197871
LR134156
Gammaproteobacteria
Salmonella enterica subsp. arizonae NCTC10047 [LR134156]
1683207
1683132
-
Pro
GGG
-
¡û
>C191199528
LR134195
Gammaproteobacteria
Raoultella ornithinolytica NCTC13096 [LR134195]
1594729
1594654
-
Pro
GGG
-
¡û
>W1910018327
BDQT01000001
Gammaproteobacteria
Klebsiella aerogenes 1.10E+13 [BDQT]
4104451
4104376
-
Pro
GGG
[ENA]
¡û
>W1910178346
BJEX01000007
Gammaproteobacteria
Enterobacter kobei Dec-42 [BJEX]
69232
69157
-
Pro
GGG
[ENA]
¡û
>W1910198643
FBVG01000017
Gammaproteobacteria
Escherichia coli EF467 [FBVG]
56873
56948
+
Pro
GGG
[ENA]
¡û
>W1911022028
NLPM01000002
Gammaproteobacteria
Escherichia coli MOD1-EC5440 [NLPM]
198285
198210
-
Pro
GGG
[ENA]
¡û
>W1911022069
NLPN01000014
Gammaproteobacteria
Escherichia coli MOD1-EC5439 [NLPN]
52410
52485
+
Pro
GGG
[ENA]
¡û
>W1911204112
NRHX01000007
Gammaproteobacteria
Klebsiella pneumoniae BA655 [NRHX]
1726
1651
-
Pro
GGG
[ENA]
¡û
>W1810242460
PPXA01000086
Gammaproteobacteria
Escherichia coli F32_3 [PPXA]
1303
1378
+
Pro
GGG
[ENA]
¡û
>WENV11100692
AEWW01014402
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
389
314
-
Pro
GGG
[ENA]
¡û
>W1511394673
JTBE01000012
Gammaproteobacteria
Escherichia coli FDA_MicroDB_82 [JTBE]
204429
204504
+
Pro
GGG
[ENA]
¡û
>C161060869
CP013831
Gammaproteobacteria
Escherichia coli CD306 [CP013831]
2520278
2520353
+
Pro
GGG
-
¡û
>W1610906090
LSBR01000559
Gammaproteobacteria
Escherichia coli [LSBR]
7699
7774
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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