This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.485115 (70 seq.)
>W1710868424
LMJB01000005
Bacteroidota
Flavobacterium sp. Root901 [LMJB]
29976
29905
-
Gln
TTG
[ENA]
¡û
>W1711138974
LVEO01000013
Bacteroidota
Flavobacterium glycines [LVEO]
475948
475875
-
Gln
TTG
[ENA]
¡û
>W131225233
AUDK01000002
Bacteroidota
Flavobacterium daejeonense DSM 17708 [AUDK]
68409
68482
+
Gln
TTG
[ENA]
¡û
>W131225309
AUDL01000014
Bacteroidota
Flavobacterium denitrificans DSM 15936 [AUDL]
29602
29531
-
Gln
TTG
[ENA]
¡û
>W131225310
AUDL01000014
Bacteroidota
Flavobacterium denitrificans DSM 15936 [AUDL]
29422
29351
-
Gln
TTG
[ENA]
¡û
>W131225351
AUDM01000012
Bacteroidota
Flavobacterium filum DSM 17961 [AUDM]
83553
83626
+
Gln
TTG
[ENA]
¡û
>C171053223
CP016907
Bacteroidota
Flavobacterium anhuiense GSE09 [CP016907]
1151509
1151438
-
Gln
TTG
-
¡û
>C171053224
CP016907
Bacteroidota
Flavobacterium anhuiense GSE09 [CP016907]
1151329
1151258
-
Gln
TTG
-
¡û
>C009398
CP000685
Bacteroidota
Flavobacterium johnsoniae UW101 UW101; ATCC 17061 [CP000685]
1877676
1877746
+
Gln
TTG
[Ensembl]
¡û
>C009399
CP000685
Bacteroidota
Flavobacterium johnsoniae UW101 UW101; ATCC 17061 [CP000685]
1877856
1877926
+
Gln
TTG
[Ensembl]
¡û
>WENV180038861
LLBY010008900
[LLBY] soil metagenome; soil from tomato rhizosphere
7864
7935
+
Gln
TTG
[ENA]
¢þ
>WENV180041091
LLBZ010043201
[LLBZ] soil metagenome; soil from tomato rhizosphere
8597
8668
+
Gln
TTG
[ENA]
¢þ
>WENV183726809
PJTO01000189
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
33127
33198
+
Gln
TTG
[ENA]
¢þ
>WENV183726810
PJTO01000189
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
33307
33378
+
Gln
TTG
[ENA]
¢þ
>WENV183729256
PJTQ01015945
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
11
82
+
Gln
TTG
[ENA]
¢þ
>WENV183729257
PJTQ01015945
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
191
262
+
Gln
TTG
[ENA]
¢þ
>WENV183729596
PJTQ01085018
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
89
18
-
Gln
TTG
[ENA]
¢þ
>WENV183730044
PJTR01000415
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
14428
14357
-
Gln
TTG
[ENA]
¢þ
>WENV183730045
PJTR01000415
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
14248
14177
-
Gln
TTG
[ENA]
¢þ
>WENV183730870
PJTS01001587
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
6793
6864
+
Gln
TTG
[ENA]
¢þ
>WENV183731796
PJTT01000188
[PJTT] soil metagenome; Soil (2) enriched on wood chips
79826
79897
+
Gln
TTG
[ENA]
¢þ
>WENV183731797
PJTT01000188
[PJTT] soil metagenome; Soil (2) enriched on wood chips
80006
80077
+
Gln
TTG
[ENA]
¢þ
>WENV183734742
PJUA01000002
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
554478
554549
+
Gln
TTG
[ENA]
¢þ
>WENV183734743
PJUA01000002
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
554658
554729
+
Gln
TTG
[ENA]
¢þ
>WENV183735820
PJUB01003909
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
1164
1093
-
Gln
TTG
[ENA]
¢þ
>WENV183735821
PJUB01003909
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
984
913
-
Gln
TTG
[ENA]
¢þ
>WENV183736024
PJUC01000002
[PJUC] soil metagenome; Soil enriched on filter paper
554478
554549
+
Gln
TTG
[ENA]
¢þ
>WENV183736025
PJUC01000002
[PJUC] soil metagenome; Soil enriched on filter paper
554658
554729
+
Gln
TTG
[ENA]
¢þ
>WENV170680932
LFEF01035913
[LFEF] freshwater metagenome; waterbloom
12201
12274
+
Gln
TTG
[ENA]
¢þ
>C181047505
CP020919
Bacteroidota
Flavobacterium kingsejongi WV39 [CP020919]
414637
414566
-
Gln
TTG
-
¡û
>C181047506
CP020919
Bacteroidota
Flavobacterium kingsejongi WV39 [CP020919]
414510
414439
-
Gln
TTG
-
¡û
>C181176612
CP029255
Bacteroidota
Flavobacterium crocinum HYN0056 [CP029255]
1848001
1848072
+
Gln
TTG
-
¡û
>C181176613
CP029255
Bacteroidota
Flavobacterium crocinum HYN0056 [CP029255]
1848182
1848253
+
Gln
TTG
-
¡û
>C191025440
CP023642
Bacteroidota
Flavobacterium anhuiense M168 [CP023642]
664089
664160
+
Gln
TTG
-
¡û
>C191025441
CP023642
Bacteroidota
Flavobacterium anhuiense M168 [CP023642]
664269
664340
+
Gln
TTG
-
¡û
>W09105475
AAPM01000007
Bacteroidota
Flavobacterium johnsoniae UW101 [AAPM]
427320
427249
-
Gln
TTG
[ENA]
¡û
>W09105476
AAPM01000007
Bacteroidota
Flavobacterium johnsoniae UW101 [AAPM]
427140
427069
-
Gln
TTG
[ENA]
¡û
>W141816542
JQJY01000002
Bacteroidota
Flavobacterium sp. ASV13 Fl [JQJY]
30579
30508
-
Gln
TTG
[ENA]
¡û
>W141816543
JQJY01000002
Bacteroidota
Flavobacterium sp. ASV13 Fl [JQJY]
30399
30328
-
Gln
TTG
[ENA]
¡û
>W1910577926
JUIV01000018
Bacteroidota
Flavobacterium anhuiense RCM74 [JUIV]
84505
84576
+
Gln
TTG
[ENA]
¡û
>W1910577927
JUIV01000018
Bacteroidota
Flavobacterium anhuiense RCM74 [JUIV]
84685
84756
+
Gln
TTG
[ENA]
¡û
>W1910792752
MRCM01000002
Bacteroidota
Flavobacterium sp. ACN2 [MRCM]
125525
125454
-
Gln
TTG
[ENA]
¡û
>W1910792753
MRCM01000002
Bacteroidota
Flavobacterium sp. ACN2 [MRCM]
125345
125274
-
Gln
TTG
[ENA]
¡û
>W1910809275
MUGZ01000017
Bacteroidota
Flavobacterium johnsoniae UW101 ATCC 17061 [MUGZ]
385529
385600
+
Gln
TTG
[ENA]
¡û
>W1910809276
MUGZ01000017
Bacteroidota
Flavobacterium johnsoniae UW101 ATCC 17061 [MUGZ]
385709
385780
+
Gln
TTG
[ENA]
¡û
>W1810260939
PQNY01000015
Bacteroidota
Flavobacterium croceum DSM 17960 [PQNY]
54575
54646
+
Gln
TTG
[ENA]
¡û
>W1810657123
QJGZ01000041
Bacteroidota
Flavobacterium sharifuzzamanii A7.6 [QJGZ]
553369
553440
+
Gln
TTG
[ENA]
¡û
>W1810657124
QJGZ01000041
Bacteroidota
Flavobacterium sharifuzzamanii A7.6 [QJGZ]
553549
553620
+
Gln
TTG
[ENA]
¡û
>W1810669718
QJRH01000071
Bacteroidota
Flavobacterium tistrianum GB 56.1 [QJRH]
398514
398585
+
Gln
TTG
[ENA]
¡û
>W1810669719
QJRH01000071
Bacteroidota
Flavobacterium tistrianum GB 56.1 [QJRH]
398696
398767
+
Gln
TTG
[ENA]
¡û
>W1810669766
QJRI01000181
Bacteroidota
Flavobacterium nitrogenifigens NXU-44 [QJRI]
30807
30736
-
Gln
TTG
[ENA]
¡û
>W1810669767
QJRI01000181
Bacteroidota
Flavobacterium nitrogenifigens NXU-44 [QJRI]
30627
30556
-
Gln
TTG
[ENA]
¡û
>W1810696096
QLSZ01000005
Bacteroidota
Flavobacterium aciduliphilum DSM 25663 [QLSZ]
10951
10880
-
Gln
TTG
[ENA]
¡û
>W1810787308
QRDQ01000008
Bacteroidota
Flavobacterium cutihirudinis DSM 25795 [QRDQ]
1239890
1239961
+
Gln
TTG
[ENA]
¡û
>W1810787309
QRDQ01000008
Bacteroidota
Flavobacterium cutihirudinis DSM 25795 [QRDQ]
1240071
1240142
+
Gln
TTG
[ENA]
¡û
>W1610534955
JRLG01000025
Bacteroidota
Flavobacterium daejeonense [JRLG]
165979
166052
+
Gln
TTG
[ENA]
¡û
>W1610730770
LMJB01000005
Bacteroidota
Flavobacterium sp. Root901 [LMJB]
29976
29905
-
Gln
TTG
[ENA]
¡û
>W1610949982
LVEO01000013
Bacteroidota
Flavobacterium glycines [LVEO]
475948
475875
-
Gln
TTG
[ENA]
¡û
>W1710507227
FMVC01000001
Bacteroidota
Flavobacterium anhuiense [FMVC]
31724
31653
-
Gln
TTG
[ENA]
¡û
>W1710507228
FMVC01000001
Bacteroidota
Flavobacterium anhuiense [FMVC]
31544
31473
-
Gln
TTG
[ENA]
¡û
>W1710519183
FNEO01000001
Bacteroidota
Flavobacterium glycines [FNEO]
1222674
1222747
+
Gln
TTG
[ENA]
¡û
>W1710559008
FOMH01000006
Bacteroidota
Flavobacterium phragmitis [FOMH]
27519
27448
-
Gln
TTG
[ENA]
¡û
>W1710559009
FOMH01000006
Bacteroidota
Flavobacterium phragmitis [FOMH]
27338
27267
-
Gln
TTG
[ENA]
¡û
>W1710585094
FQWC01000001
Bacteroidota
Flavobacterium defluvii [FQWC]
335090
335019
-
Gln
TTG
[ENA]
¡û
>W1710585095
FQWC01000001
Bacteroidota
Flavobacterium defluvii [FQWC]
334911
334840
-
Gln
TTG
[ENA]
¡û
>W1710585325
FQWH01000001
Bacteroidota
Flavobacterium johnsoniae [FQWH]
324675
324604
-
Gln
TTG
[ENA]
¡û
>W1710585326
FQWH01000001
Bacteroidota
Flavobacterium johnsoniae [FQWH]
324495
324422
-
Gln
TTG
[ENA]
¡û
>W1710589892
FRAO01000001
Bacteroidota
Flavobacterium johnsoniae [FRAO]
1203380
1203451
+
Gln
TTG
[ENA]
¡û
>W1710589893
FRAO01000001
Bacteroidota
Flavobacterium johnsoniae [FRAO]
1203560
1203631
+
Gln
TTG
[ENA]
¡û
>W1710637191
JRLG01000025
Bacteroidota
Flavobacterium daejeonense [JRLG]
165979
166052
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK