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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.485128 (12 seq.)
>A171002742
CP003083
Euryarchaeota
Methanolobus psychrophilus R15 [CP003083]
1780288
1780361
+
Ala
TGC
-
¡û
>A171002750
CP003083
Euryarchaeota
Methanolobus psychrophilus R15 [CP003083]
2441123
2441196
+
Ala
TGC
-
¡û
>A171002766
CP003083
Euryarchaeota
Methanolobus psychrophilus R15 [CP003083]
1452892
1452819
-
Ala
TGC
-
¡û
>A171005347
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
43403
43475
+
Ala
TGC
-
¡û
>A171005357
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
542614
542686
+
Ala
TGC
-
¡û
>A171005384
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
1580919
1580847
-
Ala
TGC
-
¡û
>WENV183516634
OMKS01221154
[OMKS] sediment metagenome; hot spring sediment
365
437
+
Ala
TGC
[ENA]
¢þ
>WENV170015242
AZIF01000148
[AZIF] marine sediment metagenome; sample MGS-PRI from oil contaminated site at the harbour of Priolo Gargallo (Siracusa, Italy)
1911
1983
+
Ala
TGC
[ENA]
¢þ
>W1910229876
FOHQ01000015
Euryarchaeota
Methanococcoides vulcani SLH 33 [FOHQ]
1471
1399
-
Ala
TGC
[ENA]
¡û
>W1910575257
JRHO01000009
Euryarchaeota
Methanococcoides methylutens DSM 2657 [JRHO]
1650
1722
+
Ala
TGC
[ENA]
¡û
>W1911581838
PGGK01000028
Euryarchaeota
Methanolobus halotolerans SY-01 [PGGK]
3460
3388
-
Ala
TGC
[ENA]
¡û
>W1610919915
LSRV01000064
Euryarchaeota
Methanolobus sp. T82-4 [LSRV]
3497
3425
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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