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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.485258 (25 seq.)
>W1710852856
LLWC01000009
Alphaproteobacteria
Pseudovibrio hongkongensis [LLWC]
89840
89915
+
Ala
GGC
[ENA]
¡û
>W1710852857
LLWC01000009
Alphaproteobacteria
Pseudovibrio hongkongensis [LLWC]
89963
90038
+
Ala
GGC
[ENA]
¡û
>W1710852946
LLWE01000024
Alphaproteobacteria
Pseudovibrio stylochi [LLWE]
570281
570356
+
Ala
GGC
[ENA]
¡û
>W1710852947
LLWE01000024
Alphaproteobacteria
Pseudovibrio stylochi [LLWE]
570398
570473
+
Ala
GGC
[ENA]
¡û
>W1711229628
LXYP01000027
Alphaproteobacteria
Sphingomonadales bacterium EhC05 [LXYP]
83863
83788
-
Ala
GGC
[ENA]
¡û
>W131176520
ARKC01000010
Alphaproteobacteria
Hirschia maritima DSM 19733 [ARKC]
347882
347807
-
Ala
GGC
[ENA]
¡û
>W131230710
AUHV01000005
Alphaproteobacteria
Maritalea myrionectae DSM 19524 [AUHV]
49636
49561
-
Ala
GGC
[ENA]
¡û
>WENV180636799
OCRF01065041
[OCRF] marine metagenome; niskin bottle
29
104
+
Ala
GGC
[ENA]
¢þ
>WENV018870
AACY020520607
Marine microbial communities from Global Ocean Sampling (GOS)
2504
2427
-
Ala
GGC
[ENA]
>WENV170668337
LADL02003039
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
3161
3236
+
Ala
GGC
[ENA]
¢þ
>WENV170705009
LLEO01000872
[LLEO] bioreactor metagenome; day35 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1107
1032
-
Ala
GGC
[ENA]
¢þ
>WENV170705072
LLEP01000011
[LLEP] bioreactor metagenome; day64 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
86542
86617
+
Ala
GGC
[ENA]
¢þ
>C181062147
CP022336
Alphaproteobacteria
Sphingorhabdus sp. SMR4y [CP022336]
3320795
3320870
+
Ala
GGC
-
¡û
>C181068256
CP022548
Alphaproteobacteria
Sphingorhabdus sp. YGSMI21 [CP022548]
2193881
2193956
+
Ala
GGC
-
¡û
>C181220373
LT703001
Alphaproteobacteria
Sphingorhabdus sp. Alg231-15 [LT703001, LT703002]
1641520
1641445
-
Ala
GGC
-
¡û
>C191018812
CP021330
Alphaproteobacteria
Maritalea myrionectae HL2708#5 [CP021330]
3364307
3364232
-
Ala
GGC
-
¡û
>C09106550
CP001678
Alphaproteobacteria
Hirschia baltica ATCC 49814 [CP001678]
2508194
2508269
+
Ala
GGC
[Ensembl]
¡û
>W1911532515
OGVD01000003
Alphaproteobacteria
Sphingorhabdus sp. EL138 [OGVD]
257923
257848
-
Ala
GGC
[ENA]
¡û
>C161073973
CP014545
Alphaproteobacteria
Sphingorhabdus sp. M41 [CP014545]
2504066
2503991
-
Ala
GGC
[Ensembl]
¡û
>WENV070192
AACY023800666
Marine microbial communities from Global Ocean Sampling (GOS)
854
777
-
Ala
GGC
[ENA]
>W1610715995
LLWC01000009
Alphaproteobacteria
Pseudovibrio hongkongensis [LLWC]
89840
89915
+
Ala
GGC
[ENA]
¡û
>W1610715996
LLWC01000009
Alphaproteobacteria
Pseudovibrio hongkongensis [LLWC]
89963
90038
+
Ala
GGC
[ENA]
¡û
>W1610716085
LLWE01000024
Alphaproteobacteria
Pseudovibrio stylochi [LLWE]
570281
570356
+
Ala
GGC
[ENA]
¡û
>W1610716086
LLWE01000024
Alphaproteobacteria
Pseudovibrio stylochi [LLWE]
570398
570473
+
Ala
GGC
[ENA]
¡û
>W1611013498
LXYP01000027
Alphaproteobacteria
Sphingomonadales bacterium EhC05 [LXYP]
83863
83788
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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