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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.485412 (82 seq.)
>W1710853014
LLWF02000070
Alphaproteobacteria
Roseomonas mucosa [LLWF]
17260
17185
-
Ala
GGC
[ENA]
¡û
>W1710989969
LPWU01000130
Alphaproteobacteria
Acetobacter pasteurianus [LPWU]
19101
19026
-
Ala
GGC
[ENA]
¡û
>W1711257954
LYUD01000114
Alphaproteobacteria
Acetobacter pasteurianus [LYUD]
11945
11870
-
Ala
GGC
[ENA]
¡û
>C171032880
CP014674
Alphaproteobacteria
Kozakia baliensis DSM 14400 [CP014674]
2778535
2778460
-
Ala
GGC
-
¡û
>C171032943
CP014681
Alphaproteobacteria
Kozakia baliensis NBRC 16680 [CP014681]
2437100
2437025
-
Ala
GGC
-
¡û
>C171036152
CP015164
Alphaproteobacteria
Acetobacter ascendens LMG 1590 [CP015164]
2489497
2489572
+
Ala
GGC
-
¡û
>C171036245
CP015168
Alphaproteobacteria
Acetobacter ascendens LMG 1591 [CP015168]
740147
740072
-
Ala
GGC
-
¡û
>C171039529
CP015583
Alphaproteobacteria
Roseomonas gilardii U14-5 [CP015583, CP015584]
342730
342805
+
Ala
GGC
-
¡û
>C171074528
CP018190
Alphaproteobacteria
Granulibacter bethesdensis NIH5.1 [CP018190]
72850
72925
+
Ala
GGC
-
¡û
>C171074580
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
72868
72943
+
Ala
GGC
-
¡û
>C171074632
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
72839
72914
+
Ala
GGC
-
¡û
>C171074684
CP018193
Alphaproteobacteria
Granulibacter bethesdensis NIH7.1 [CP018193]
72864
72939
+
Ala
GGC
-
¡û
>C171074736
CP018194
Alphaproteobacteria
Granulibacter bethesdensis NIH8.1 [CP018194]
72869
72944
+
Ala
GGC
-
¡û
>C171074788
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
72849
72924
+
Ala
GGC
-
¡û
>C171120261
CP021509
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus SRCM101342 [CP021509]
1242022
1242097
+
Ala
GGC
-
¡û
>C171120356
CP021524
Alphaproteobacteria
Acetobacter ascendens SRCM101447 [CP021524]
1283067
1282992
-
Ala
GGC
-
¡û
>C171126454
CP021922
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus SRCM101468 [CP021922]
1342468
1342393
-
Ala
GGC
-
¡û
>W131222519
AUBI01000006
Alphaproteobacteria
Acetobacter nitrogenifigens DSM 23921 [AUBI]
6382
6457
+
Ala
GGC
[ENA]
¡û
>C000512
CP000697
Alphaproteobacteria
Acidiphilium cryptum JF-5 [CP000697]
1734434
1734359
-
Ala
GGC
[Ensembl]
¡û
>C009810
CP000394
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH1 [CP000394]
72849
72924
+
Ala
GGC
[Ensembl]
¡û
>W08009504
ABPH01000005
Alphaproteobacteria
Gluconacetobacter diazotrophicus PAl 5 [ABPH]
86254
86329
+
Ala
GGC
[ENA]
¡û
>W141200344
AYXS01000010
Alphaproteobacteria
Asaia sp. SF2.1 [AYXS]
71859
71784
-
Ala
GGC
[ENA]
¡û
>W141224578
BAIN01000060
Alphaproteobacteria
Acetobacter papayae JCM 25143 [BAIN]
7591
7516
-
Ala
GGC
[ENA]
¡û
>W141226061
BAJT01000004
Alphaproteobacteria
Asaia astilbis JCM 15831 [BAJT]
73648
73723
+
Ala
GGC
[ENA]
¡û
>W141226171
BAJV01000012
Alphaproteobacteria
Asaia prunellae JCM 25354 [BAJV]
8303
8228
-
Ala
GGC
[ENA]
¡û
>W141227257
BAKW01000005
Alphaproteobacteria
Asaia platycodi JCM 25414 [BAKW]
61971
62046
+
Ala
GGC
[ENA]
¡û
>W141247948
CBLX010000023
Alphaproteobacteria
Asaia bogorensis SF2.1 [CBLX]
50470
50545
+
Ala
GGC
[ENA]
¡û
>C08005241
AM889285
Alphaproteobacteria
Gluconacetobacter diazotrophicus PA1 5 PAl 5 [AM889285]
1207310
1207385
+
Ala
GGC
[Ensembl]
¡û
>W141276634
JADY01000007
Alphaproteobacteria
Roseomonas gilardii subsp. rosea ATCC BAA-691 [JADY]
94692
94617
-
Ala
GGC
[ENA]
¡û
>W141428594
JEOA01000001
Alphaproteobacteria
Acetobacter aceti 1023 [JEOA]
315315
315240
-
Ala
GGC
[ENA]
¡û
>WENV170669506
LAHS01000362
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
99630
99555
-
Ala
GGC
[ENA]
¢þ
>W141462235
JFHO01000018
Alphaproteobacteria
Acidiphilium sp. JA12-A1 [JFHO]
29837
29912
+
Ala
GGC
[ENA]
¡û
>C181102029
CP024588
Alphaproteobacteria
Roseomonas sp. FDAARGOS_362 [CP024588]
3332585
3332660
+
Ala
GGC
-
¡û
>W141558729
JHWD01000018
Alphaproteobacteria
Roseomonas mucosa ATCC BAA-692 [JHWD]
56326
56251
-
Ala
GGC
[ENA]
¡û
>W141726089
JNAB01000013
Alphaproteobacteria
Kozakia baliensis [JNAB]
48582
48657
+
Ala
GGC
[ENA]
¡û
>W09105109
AAOO01000003
Alphaproteobacteria
Acidiphilium cryptum JF-5 [AAOO]
159199
159124
-
Ala
GGC
[ENA]
¡û
>W1910007898
BDER01000001
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471 [BDER]
16310
16385
+
Ala
GGC
[ENA]
¡û
>W1910007989
BDES01000069
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3188 [BDES]
118963
119038
+
Ala
GGC
[ENA]
¡û
>W1910008004
BDET01000001
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3222 [BDET]
64827
64902
+
Ala
GGC
[ENA]
¡û
>W1910008053
BDEU01000001
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3277 [BDEU]
7168
7243
+
Ala
GGC
[ENA]
¡û
>W1910008151
BDEV01000100
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3278 [BDEV]
6927
7002
+
Ala
GGC
[ENA]
¡û
>W1910008209
BDEW01000091
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3279 [BDEW]
6874
6949
+
Ala
GGC
[ENA]
¡û
>W1910008256
BDEX01000096
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3280 [BDEX]
7168
7243
+
Ala
GGC
[ENA]
¡û
>W1910008360
BDEZ01000056
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3299 [BDEZ]
91853
91928
+
Ala
GGC
[ENA]
¡û
>C09106293
CP001189
Alphaproteobacteria
Gluconacetobacter diazotrophicus PA1 5 PAl 5; ATCC 49037 [CP001189]
2139559
2139634
+
Ala
GGC
[Ensembl]
¡û
>W1910181789
BJMI01000015
Alphaproteobacteria
Gluconacetobacter liquefaciens NBRC 12388 [BJMI]
24313
24238
-
Ala
GGC
[ENA]
¡û
>W1910182378
BJMV01000006
Alphaproteobacteria
Acetobacter peroxydans NBRC 13755 [BJMV]
99615
99540
-
Ala
GGC
[ENA]
¡û
>C141012363
HF677570
Alphaproteobacteria
Acetobacter pasteurianus 386B [HF677570]
1560313
1560388
+
Ala
GGC
[Ensembl]
¡û
>W1910657435
MAPU01000003
Alphaproteobacteria
Acetobacter pasteurianus BCRC 14118 [MAPU]
91891
91966
+
Ala
GGC
[ENA]
¡û
>W1910753222
MKHC01000012
Alphaproteobacteria
Acetobacter pasteurianus BCRC14145 [MKHC]
16228
16303
+
Ala
GGC
[ENA]
¡û
>W1911597812
PNQZ01000001
Alphaproteobacteria
Asaia sp. W19 [PNQZ]
116715
116640
-
Ala
GGC
[ENA]
¡û
>W1810069687
PEBQ01000037
Alphaproteobacteria
Acetobacter pomorum LHT 2458 [PEBQ]
133
58
-
Ala
GGC
[ENA]
¡û
>W1810763125
QQAW01000001
Alphaproteobacteria
Gluconacetobacter liquefaciens DSM 5603 [QQAW]
116316
116391
+
Ala
GGC
[ENA]
¡û
>C151004000
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
72872
72947
+
Ala
GGC
[Ensembl]
¡û
>C151004052
CP003182
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH4 [CP003182]
72925
73000
+
Ala
GGC
[Ensembl]
¡û
>C151004104
CP003183
Alphaproteobacteria
Granulibacter bethesdensis NIH2.1 [CP003183]
72853
72928
+
Ala
GGC
[Ensembl]
¡û
>C151091072
CP012111
Alphaproteobacteria
Acetobacter pasteurianus Ab3 [CP012111]
842064
842139
+
Ala
GGC
[Ensembl]
¡û
>C10100662
AP011163
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-01-42C [AP011163]
2805493
2805568
+
Ala
GGC
[Ensembl]
¡û
>C10100716
AP011121
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-01 [AP011121]
2897747
2897822
+
Ala
GGC
[Ensembl]
¡û
>C10100773
AP011128
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-03 [AP011128]
2897539
2897614
+
Ala
GGC
[Ensembl]
¡û
>C10100830
AP011135
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-07 [AP011135]
2896296
2896371
+
Ala
GGC
[Ensembl]
¡û
>C10100887
AP011170
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-12 [AP011170]
2894876
2894951
+
Ala
GGC
[Ensembl]
¡û
>C10100944
AP011142
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-22 [AP011142]
2897519
2897594
+
Ala
GGC
[Ensembl]
¡û
>C10101001
AP011149
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-26 [AP011149]
2897561
2897636
+
Ala
GGC
[Ensembl]
¡û
>C10101058
AP011156
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-32 [AP011156]
2894894
2894969
+
Ala
GGC
[Ensembl]
¡û
>C11100970
AP012035
Alphaproteobacteria
Acidiphilium multivorum AIU301 [AP012035]
1806454
1806379
-
Ala
GGC
[Ensembl]
¡û
>W11170623
AFPR01000099
Alphaproteobacteria
Acidiphilium sp. PM [AFPR]
11296
11221
-
Ala
GGC
[ENA]
¡û
>C161001094
AP014690
Alphaproteobacteria
Asaia bogorensis NBRC 16594 [AP014690]
3191668
3191593
-
Ala
GGC
[Ensembl]
¡û
>C165000082
AP014881
Alphaproteobacteria
Acetobacter pasteurianus NBRC 101655 [AP014881]
2902334
20
-
Ala
GGC
-
¡û
>W121113853
ALOX01000079
Alphaproteobacteria
Roseomonas sp. B5 [ALOX]
16518
16443
-
Ala
GGC
[ENA]
¡û
>W121122957
BACF01000004
Alphaproteobacteria
Acetobacter pasteurianus NBRC 101655 [BACF]
19101
19026
-
Ala
GGC
[ENA]
¡û
>W121123004
BACG01000009
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 [BACG]
67334
67259
-
Ala
GGC
[ENA]
¡û
>W121126867
CADO01000020
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 [CADO]
9931
9856
-
Ala
GGC
[ENA]
¡û
>W121126913
CADQ01000031
Alphaproteobacteria
Acetobacter pasteurianus 3P3 [CADQ]
67470
67395
-
Ala
GGC
[ENA]
¡û
>W1610040677
BALE01000047
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
4225
4300
+
Ala
GGC
[ENA]
¡û
>W1610040983
BANA01000445
Alphaproteobacteria
Acidiphilium multivorum AIU301 [BANA]
1112
1037
-
Ala
GGC
[ENA]
¡û
>W1610716149
LLWF01000376
Alphaproteobacteria
Roseomonas mucosa [LLWF]
2594
2669
+
Ala
GGC
[ENA]
¡û
>W1611020426
LYUD01000114
Alphaproteobacteria
Acetobacter pasteurianus [LYUD]
11945
11870
-
Ala
GGC
[ENA]
¡û
>W1710037875
BALE01000047
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
4225
4300
+
Ala
GGC
[ENA]
¡û
>W1710038181
BANA01000445
Alphaproteobacteria
Acidiphilium multivorum AIU301 [BANA]
1112
1037
-
Ala
GGC
[ENA]
¡û
>W1710084269
BDLP01000022
Alphaproteobacteria
Roseomonas sp. TAS13 [BDLP]
22183
22108
-
Ala
GGC
[ENA]
¡û
>W1710624955
JOPL01000038
Alphaproteobacteria
Acetobacter sp. DsW_063 [JOPL]
62378
62453
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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