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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.485746 (19 seq.)
>C171109180
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
516233
516306
+
Gly
TCC
-
¡û
>C171109209
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1417150
1417223
+
Gly
TCC
-
¡û
>C171109238
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1759527
1759600
+
Gly
TCC
-
¡û
>C171109271
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4095737
4095664
-
Gly
TCC
-
¡û
>C171109293
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4087817
4087744
-
Gly
TCC
-
¡û
>WENV180094934
MTBK01039332
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
426
499
+
Gly
TCC
[ENA]
¢þ
>WENV180098086
MTBK01227307
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
193
266
+
Gly
TCC
[ENA]
¢þ
>WENV170674941
LCWY01027200
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
173
100
-
Gly
TCC
[ENA]
¢þ
>WENV170675108
LCWZ01007145
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
7
80
+
Gly
TCC
[ENA]
¢þ
>WENV170675122
LCWZ01007443
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
309
382
+
Gly
TCC
[ENA]
¢þ
>W141561144
JHYF01000002
Bacillota
Alkaliphilus transvaalensis ATCC 700919 [JHYF]
660
733
+
Gly
TCC
[ENA]
¡û
>W141561167
JHYF01000010
Bacillota
Alkaliphilus transvaalensis ATCC 700919 [JHYF]
90089
90016
-
Gly
TCC
[ENA]
¡û
>W1910548234
FZOJ01000008
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
175762
175689
-
Gly
TCC
[ENA]
¡û
>W1511527514
JYHU01000002
Bacillota
Clostridium aceticum DSM 1496 [JYHU]
299200
299127
-
Gly
TCC
[ENA]
¡û
>W1511527529
JYHU01000004
Bacillota
Clostridium aceticum DSM 1496 [JYHU]
266728
266801
+
Gly
TCC
[ENA]
¡û
>W1710531821
FNPV01000002
Bacillota
Tindallia californiensis [FNPV]
387726
387653
-
Gly
TCC
[ENA]
¡û
>W1710531837
FNPV01000005
Bacillota
Tindallia californiensis [FNPV]
3752
3825
+
Gly
TCC
[ENA]
¡û
>W1710563815
FOQA01000001
Bacillota
Tindallia magadiensis [FOQA]
3846
3919
+
Gly
TCC
[ENA]
¡û
>W1710563844
FOQA01000006
Bacillota
Tindallia magadiensis [FOQA]
201253
201180
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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