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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.485747 (11 seq.)
>W1711229282
LXYH01000016
Alphaproteobacteria
Rhodobacteraceae bacterium EhC02 [LXYH]
183237
183312
+
Met
CAT
[ENA]
¡û
>C171064565
CP017622
Alphaproteobacteria
Ketogulonicigenium vulgare SPU B805 [CP017622]
1363812
1363737
-
Met
CAT
-
¡û
>C171101173
CP019937
Alphaproteobacteria
Ketogulonicigenium robustum SPU_B003 [CP019937]
963209
963134
-
Met
CAT
-
¡û
>WENV180360887
OBNU01048609
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
251
176
-
Ile2
CAT
[ENA]
¢þ
>WENV170959099
MKWU01003055
[MKWU] sponge metagenome;
9980
9905
-
Met
CAT
[ENA]
¢þ
>WENV170961151
MKWU01088390
[MKWU] sponge metagenome;
643
718
+
Met
CAT
[ENA]
¢þ
>C11111845
CP002018
Alphaproteobacteria
Ketogulonicigenium vulgare WSH-001 [CP002018]
819369
819294
-
Met
CAT
[Ensembl]
¡û
>C11111897
CP002224
Alphaproteobacteria
Ketogulonicigenium vulgare Y25 [CP002224]
1224765
1224690
-
Met
CAT
[Ensembl]
¡û
>C161047289
CP012908
Alphaproteobacteria
Ketogulonicigenium vulgare Hbe602 [CP012908]
1209749
1209674
-
Met
CAT
-
¡û
>C161100015
CP016592
Alphaproteobacteria
Ketogulonicigenium vulgare SKV [CP016592]
1209571
1209496
-
Met
CAT
-
¡û
>W1611013152
LXYH01000016
Alphaproteobacteria
Rhodobacteraceae bacterium EhC02 [LXYH]
183237
183312
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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