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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.485769 (18 seq.)
>C171100105
CP019799
Gammaproteobacteria
Cellvibrio sp. PSBB023 [CP019799]
207764
207839
+
Lys
TTT
-
¡û
>C171100106
CP019799
Gammaproteobacteria
Cellvibrio sp. PSBB023 [CP019799]
207884
207959
+
Lys
TTT
-
¡û
>WENV180266115
OBEQ011722847
[OBEQ] groundwater metagenome; groundwater
3038
3113
+
Lys
TTT
[ENA]
¢þ
>WENV181169525
OEIV010003594
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
76
1
-
Lys
TTT
[ENA]
¢þ
>WENV181401287
OFSF01109977
[OFSF] wastewater metagenome; Exp Tend VB 100WW
421
346
-
Lys
TTT
[ENA]
¢þ
>WENV181841455
OGVR01035439
[OGVR] freshwater metagenome; freshwater
436
511
+
Lys
TTT
[ENA]
¢þ
>C08003240
CP000934
Gammaproteobacteria
Cellvibrio japonicus Ueda107 [CP000934]
3316725
3316653
-
Lys
TTT
[Ensembl]
¡û
>C08003241
CP000934
Gammaproteobacteria
Cellvibrio japonicus Ueda107 [CP000934]
3316566
3316494
-
Lys
TTT
[Ensembl]
¡û
>WENV170554385
CXWK01066528
[CXWK] wastewater metagenome; activated sludge
1268
1343
+
Lys
TTT
[ENA]
¢þ
>WENV170973840
MTKY01051298
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
5615
5690
+
Lys
TTT
[ENA]
¢þ
>C181173115
CP029064
Gammaproteobacteria
Microbulbifer sp. A4B17 [CP029064]
819986
820061
+
Lys
TTT
-
¡û
>W1910911053
NHNI01000002
Gammaproteobacteria
Cellvibrio mixtus PSBB022 [NHNI]
158159
158234
+
Lys
TTT
[ENA]
¡û
>W1910911054
NHNI01000002
Gammaproteobacteria
Cellvibrio mixtus PSBB022 [NHNI]
158279
158354
+
Lys
TTT
[ENA]
¡û
>W1510018797
BBUL01000096
Gammaproteobacteria
Cellvibrio sp. OA-2007 [BBUL]
171571
171496
-
Lys
TTT
[ENA]
¡û
>W1510018798
BBUL01000096
Gammaproteobacteria
Cellvibrio sp. OA-2007 [BBUL]
171451
171376
-
Lys
TTT
[ENA]
¡û
>W1511548636
JZSC01000003
Gammaproteobacteria
Cellvibrio sp. pealriver [JZSC]
1648585
1648510
-
Lys
TTT
[ENA]
¡û
>W121045189
AICM01000007
Gammaproteobacteria
Cellvibrio sp. BR [AICM]
428085
428010
-
Lys
TTT
[ENA]
¡û
>W121045190
AICM01000007
Gammaproteobacteria
Cellvibrio sp. BR [AICM]
427966
427891
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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