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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.486242 (28 seq.)
>W131162554
AQYY01000019
Bacillota
Dehalobacter sp. FTH1 [AQYY]
24881
24808
-
Gly
TCC
[ENA]
¡û
>W1711342437
MCHF01000002
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
170471
170544
+
Gly
TCC
[ENA]
¡û
>WENV180007535
FLSA01065318
[FLSA] metagenome; saliva
1211
1138
-
Gly
TCC
[ENA]
¢þ
>WENV180540427
OCHQ01037889
[OCHQ] human gut metagenome; human gut
364
434
+
Gly
TCC
[ENA]
¢þ
>WENV180628091
OCQO01035235
[OCQO] human gut metagenome; human gut
175
102
-
Gly
TCC
[ENA]
¢þ
>WENV180680465
OCVV012543272
[OCVV] gut metagenome; gut
132
205
+
Gly
TCC
[ENA]
¢þ
>WENV180680466
OCVV012543272
[OCVV] gut metagenome; gut
132
205
+
Gly
TCC
[ENA]
¢þ
>WENV180734937
ODGZ01036879
[ODGZ] human metagenome; G_DNA_Supragingival plaque
685
758
+
Gly
TCC
[ENA]
¢þ
>W141088301
AUUR01000120
Bacillota
Dehalobacter sp. UNSWDHB [AUUR]
16798
16725
-
Gly
TCC
[ENA]
¡û
>WENV180976398
ODUY01098629
[ODUY] human metagenome; G_DNA_Supragingival plaque
478
551
+
Gly
TCC
[ENA]
¢þ
>WENV181091874
OEBC01113483
[OEBC] human metagenome; G_DNA_Supragingival plaque
379
452
+
Gly
TCC
[ENA]
¢þ
>W141246583
CANE01000031
Bacillota
Dehalobacter restrictus E1 [CANE]
15312
15385
+
Gly
TCC
[ENA]
¡û
>W141246665
CANF01002296
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
4917
4844
-
Gly
TCC
[ENA]
¡û
>C191174959
CP040093
Bacillota
Caloramator sp. E03 [CP040093]
936801
936728
-
Gly
TCC
-
¡û
>C191174966
CP040093
Bacillota
Caloramator sp. E03 [CP040093]
936188
936115
-
Gly
TCC
-
¡û
>C141011751
CP007033
Bacillota
Dehalobacter restrictus DSM 9455 PER-K23; DSM 9455 [CP007033]
1154147
1154220
+
Gly
TCC
[Ensembl]
¡û
>W1910647152
LXPC01000002
Bacillota
Dehalobacter sp. MCB1 [LXPC]
24850
24777
-
Gly
TCC
[ENA]
¡û
>W1911608719
PNXX01000013
Bacillota
Dehalobacter sp. 14DCB1 [PNXX]
23799
23872
+
Gly
TCC
[ENA]
¡û
>W1911613549
POSF01000006
Bacillota
Dehalobacter sp. 12DCB1 [POSF]
24601
24528
-
Gly
TCC
[ENA]
¡û
>W1510755129
CYSK01000013
Bacillota
Desnuesiella massiliensis mt10 [CYSK]
871131
871204
+
Gly
TCC
[ENA]
¡û
>W1510755137
CYSK01000013
Bacillota
Desnuesiella massiliensis mt10 [CYSK]
871851
871924
+
Gly
TCC
[ENA]
¡û
>C131008544
CP003869
Bacillota
Dehalobacter sp. DCA [CP003869]
2084397
2084324
-
Gly
TCC
[Ensembl]
¡û
>C131008595
CP003870
Bacillota
Dehalobacter sp. CF [CP003870]
2114185
2114112
-
Gly
TCC
[Ensembl]
¡û
>W1710602541
FUYH01000010
Bacillota
Caloramator quimbayensis [FUYH]
17628
17701
+
Gly
TCC
[ENA]
¡û
>W1710602548
FUYH01000010
Bacillota
Caloramator quimbayensis [FUYH]
18231
18304
+
Gly
TCC
[ENA]
¡û
>W1710731274
LFYL01000004
Bacillota
Clostridium pasteurianum [LFYL]
23568
23495
-
Gly
TCC
[ENA]
¡û
>W1710731284
LFYL01000004
Bacillota
Clostridium pasteurianum [LFYL]
22602
22529
-
Gly
TCC
[ENA]
¡û
>W1710731290
LFYL01000009
Bacillota
Clostridium pasteurianum [LFYL]
3690
3763
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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