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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.486326 (101 seq.)
>W1710878471
LMQZ01000001
Gammaproteobacteria
Pseudomonas sp. Leaf434 [LMQZ]
1848131
1848204
+
Cys
GCA
[ENA]
¡û
>W131065734
ANNV01000071
Gammaproteobacteria
Pseudomonas sp. CBZ-4 [ANNV]
1425
1352
-
Cys
GCA
[ENA]
¡û
>W131155185
AQOH01000211
Gammaproteobacteria
Pseudomonas fuscovaginae SE-1 [AQOH]
7054
7127
+
Cys
GCA
[ENA]
¡û
>W1711625365
MPIP01000003
Gammaproteobacteria
Pseudomonas sp. FSL W5-0299 [MPIP]
93476
93549
+
Cys
GCA
[ENA]
¡û
>W1711626987
MPLD01000007
Gammaproteobacteria
Pseudomonas koreensis [MPLD]
57984
57911
-
Cys
GCA
[ENA]
¡û
>W1712004932
NEHE01000013
Gammaproteobacteria
Pseudomonas sp. R5(2017) [NEHE]
6684
6611
-
Cys
GCA
[ENA]
¡û
>W1712006200
NEHZ01000010
Gammaproteobacteria
Pseudomonas sp. R25(2017) [NEHZ]
214514
214587
+
Cys
GCA
[ENA]
¡û
>W1712006513
NEIE01000016
Gammaproteobacteria
Pseudomonas sp. R20(2017) [NEIE]
7190
7117
-
Cys
GCA
[ENA]
¡û
>W1712007505
NEIU01000013
Gammaproteobacteria
Pseudomonas sp. B3(2017) [NEIU]
8404
8331
-
Cys
GCA
[ENA]
¡û
>W1712008191
NEJF01000036
Gammaproteobacteria
Pseudomonas sp. B2(2017) [NEJF]
6942
6869
-
Cys
GCA
[ENA]
¡û
>C171077407
CP018319
Gammaproteobacteria
Pseudomonas frederiksbergensis AS1 [CP018319]
5335042
5335115
+
Cys
GCA
-
¡û
>WENV181371001
OFQU01005861
[OFQU] wastewater metagenome; Exp Tend CN 90WW
1241
1168
-
Cys
GCA
[ENA]
¢þ
>W141187836
AYMJ01000029
Gammaproteobacteria
Pseudomonas sp. H1h [AYMJ]
71940
71867
-
Cys
GCA
[ENA]
¡û
>W141188845
AYMZ01000003
Gammaproteobacteria
Pseudomonas moraviensis R28-S [AYMZ]
1969464
1969537
+
Cys
GCA
[ENA]
¡û
>W141213277
AZRW01000020
Gammaproteobacteria
Pseudomonas sp. QTF5 [AZRW]
22582
22509
-
Cys
GCA
[ENA]
¡û
>W141217827
AZVV01000009
Gammaproteobacteria
Pseudomonas sp. URMO17WK12:I12 [AZVV]
287011
287084
+
Cys
GCA
[ENA]
¡û
>W141230515
BATD01000122
Gammaproteobacteria
Pseudomonas fuscovaginae DAR 77795 [BATD]
11395
11468
+
Cys
GCA
[ENA]
¡û
>W141230554
BATE01000095
Gammaproteobacteria
Pseudomonas fuscovaginae DAR 77800 [BATE]
4776
4849
+
Cys
GCA
[ENA]
¡û
>W141230652
BATG01000067
Gammaproteobacteria
Pseudomonas fuscovaginae ICMP 5940 [BATG]
90993
90920
-
Cys
GCA
[ENA]
¡û
>WENV170706746
LNAP01006083
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
10195
10268
+
Cys
GCA
[ENA]
¢þ
>WENV170707448
LNAP01021204
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3961
4031
+
Cys
GCA
[ENA]
¢þ
>WENV170707792
LNAP01034291
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2409
2479
+
Cys
GCA
[ENA]
¢þ
>WENV170708009
LNAP01043951
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
26
99
+
Cys
GCA
[ENA]
¢þ
>WENV170708623
LNAP01099939
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
26
99
+
Cys
GCA
[ENA]
¢þ
>W141484236
JFYN01000008
Gammaproteobacteria
Pseudomonas sp. RIT288 [JFYN]
90335
90262
-
Cys
GCA
[ENA]
¡û
>W141484816
JFYX01000005
Gammaproteobacteria
Pseudomonas sp. RIT357 [JFYX]
31995
31922
-
Cys
GCA
[ENA]
¡û
>C181143667
CP026881
Gammaproteobacteria
Pseudomonas sp. LG1D9 [CP026881]
5288077
5288150
+
Cys
GCA
-
¡û
>C181179199
CP029482
Gammaproteobacteria
Pseudomonas sp. 31-12 [CP029482]
3800981
3800908
-
Cys
GCA
-
¡û
>C191052030
CP027708
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium ATCC 17411 [CP027708]
3849351
3849278
-
Cys
GCA
-
¡û
>C191054137
CP027740
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium ChPhzS140 [CP027740]
3871908
3871835
-
Cys
GCA
-
¡û
>W141558143
JHVR01000013
Gammaproteobacteria
Pseudomonas sp. URHB0015 [JHVR]
66353
66280
-
Cys
GCA
[ENA]
¡û
>W1910504161
FYDH01000003
Gammaproteobacteria
Pseudomonas sp. Irchel s3h9 [FYDH]
33172
33099
-
Cys
GCA
[ENA]
¡û
>W1910504340
FYDK01000002
Gammaproteobacteria
Pseudomonas sp. Irchel 3H9 [FYDK]
713516
713589
+
Cys
GCA
[ENA]
¡û
>W1910504430
FYDL01000024
Gammaproteobacteria
Pseudomonas sp. Irchel s3h17 [FYDL]
45392
45465
+
Cys
GCA
[ENA]
¡û
>W1910504549
FYDN01000017
Gammaproteobacteria
Pseudomonas sp. Irchel s3a12 [FYDN]
76556
76483
-
Cys
GCA
[ENA]
¡û
>W1910504622
FYDP01000001
Gammaproteobacteria
Pseudomonas sp. Irchel 3F6 [FYDP]
627614
627687
+
Cys
GCA
[ENA]
¡û
>W1910505001
FYDV01000009
Gammaproteobacteria
Pseudomonas sp. Irchel s3a18 [FYDV]
112444
112371
-
Cys
GCA
[ENA]
¡û
>W1910505235
FYDZ01000008
Gammaproteobacteria
Pseudomonas sp. Irchel s3f10 [FYDZ]
185541
185468
-
Cys
GCA
[ENA]
¡û
>W1910505298
FYEA01000008
Gammaproteobacteria
Pseudomonas sp. Irchel 3H7 [FYEA]
238739
238666
-
Cys
GCA
[ENA]
¡û
>W1910619279
LJRZ01000447
Gammaproteobacteria
Pseudomonas sp. 2822-17 [LJRZ]
12854
12781
-
Cys
GCA
[ENA]
¡û
>W1910644732
LUUC01000060
Gammaproteobacteria
Pseudomonas asplenii 4A7 [LUUC]
174132
174059
-
Cys
GCA
[ENA]
¡û
>W1910766134
MOAL01000004
Gammaproteobacteria
Pseudomonas chlororaphis 14D6 [MOAL]
2212204
2212131
-
Cys
GCA
[ENA]
¡û
>W1910767548
MOBK01000001
Gammaproteobacteria
Pseudomonas brassicacearum 38D7 [MOBK]
390995
390922
-
Cys
GCA
[ENA]
¡û
>W1910767889
MOBQ01000003
Gammaproteobacteria
Pseudomonas frederiksbergensis 37A10 [MOBQ]
184333
184406
+
Cys
GCA
[ENA]
¡û
>W1910767961
MOBR01000009
Gammaproteobacteria
Pseudomonas frederiksbergensis 38F7 [MOBR]
450161
450088
-
Cys
GCA
[ENA]
¡û
>W1910768108
MOBT01000017
Gammaproteobacteria
Pseudomonas fluorescens 48D1 [MOBT]
529044
529117
+
Cys
GCA
[ENA]
¡û
>W1911568209
PCQC01000006
Gammaproteobacteria
Pseudomonas sp. MYb2 [PCQC]
430402
430329
-
Cys
GCA
[ENA]
¡û
>W1911614566
POWE01000187
Gammaproteobacteria
Pseudomonas gingeri NCPPB 3146 = LMG 5327 [POWE]
75192
75265
+
Cys
GCA
[ENA]
¡û
>W1911671256
QFZZ01000001
Gammaproteobacteria
Pseudomonas sp. CFBP13508 [QFZZ]
376618
376691
+
Cys
GCA
[ENA]
¡û
>W1810071871
PEEY01000001
Gammaproteobacteria
Pseudomonas sp. 29 29 [PEEY]
28307
28234
-
Cys
GCA
[ENA]
¡û
>W1810120600
PHSU01000031
Gammaproteobacteria
Pseudomonas sp. QS1027 [PHSU]
1824
1751
-
Cys
GCA
[ENA]
¡û
>W1810156143
PJBC01000060
Gammaproteobacteria
Pseudomonas sp. Choline-02u-1 [PJBC]
87553
87626
+
Cys
GCA
[ENA]
¡û
>W1810204608
PODJ01000001
Gammaproteobacteria
Pseudomonas sp. FW305-47B [PODJ]
121268
121341
+
Cys
GCA
[ENA]
¡û
>W1810204776
PODM01000002
Gammaproteobacteria
Pseudomonas sp. FW305-122 [PODM]
167191
167118
-
Cys
GCA
[ENA]
¡û
>W1810206285
POEN01000003
Gammaproteobacteria
Pseudomonas sp. GW101-1A09 [POEN]
57943
58016
+
Cys
GCA
[ENA]
¡û
>W1810206401
POEP01000017
Gammaproteobacteria
Pseudomonas sp. GW460-13 [POEP]
32997
32924
-
Cys
GCA
[ENA]
¡û
>W1810206441
POEQ01000002
Gammaproteobacteria
Pseudomonas sp. GW456-E6 [POEQ]
57982
58055
+
Cys
GCA
[ENA]
¡û
>W1810206643
POET01000031
Gammaproteobacteria
Pseudomonas sp. MPR-TSA4 [POET]
35627
35700
+
Cys
GCA
[ENA]
¡û
>W1810206790
POEW01000008
Gammaproteobacteria
Pseudomonas sp. MPR-R2A2 [POEW]
104657
104730
+
Cys
GCA
[ENA]
¡û
>W1810206832
POEX01000002
Gammaproteobacteria
Pseudomonas sp. FW306-07-L [POEX]
105720
105793
+
Cys
GCA
[ENA]
¡û
>W1810206912
POEY01000025
Gammaproteobacteria
Pseudomonas sp. GW460-7 [POEY]
58010
58083
+
Cys
GCA
[ENA]
¡û
>W1810206957
POEZ01000014
Gammaproteobacteria
Pseudomonas sp. MPR-AND1A [POEZ]
57971
58044
+
Cys
GCA
[ENA]
¡û
>W1810207056
POFB01000003
Gammaproteobacteria
Pseudomonas sp. FW305-BF8 [POFB]
102194
102121
-
Cys
GCA
[ENA]
¡û
>W1810207269
POFF01000001
Gammaproteobacteria
Pseudomonas sp. GW456-12-1-14-LB2 [POFF]
105612
105685
+
Cys
GCA
[ENA]
¡û
>W1810207329
POFG01000014
Gammaproteobacteria
Pseudomonas sp. FW305-3-2-15-A-R2A1 [POFG]
57978
58051
+
Cys
GCA
[ENA]
¡û
>W1810207554
POFK01000013
Gammaproteobacteria
Pseudomonas sp. GW460-E13 [POFK]
63703
63776
+
Cys
GCA
[ENA]
¡û
>W1810207749
POFN01000032
Gammaproteobacteria
Pseudomonas sp. FW215-L1 [POFN]
42718
42645
-
Cys
GCA
[ENA]
¡û
>W1810207889
POFQ01000002
Gammaproteobacteria
Pseudomonas sp. FW215-E1 [POFQ]
452300
452227
-
Cys
GCA
[ENA]
¡û
>W1810239227
PPSF01000016
Gammaproteobacteria
Pseudomonas sp. FW300-N1A1 [PPSF]
44999
45072
+
Cys
GCA
[ENA]
¡û
>W1810243444
PPYB02000005
Gammaproteobacteria
Pseudomonas sp. MWU13-2860 [PPYB]
81072
80999
-
Cys
GCA
[ENA]
¡û
>W1810580664
QETJ01000005
Gammaproteobacteria
Pseudomonas sp. NDM [QETJ]
13955
14028
+
Cys
GCA
[ENA]
¡û
>W1810596677
QGGS01000001
Gammaproteobacteria
Pseudomonas sp. OV226 [QGGS]
309481
309554
+
Cys
GCA
[ENA]
¡û
>W1810685410
QKZG01000005
Gammaproteobacteria
Pseudomonas sp. 478 [QKZG]
329999
329926
-
Cys
GCA
[ENA]
¡û
>W1810884503
QUMR01000003
Gammaproteobacteria
Pseudomonas sp. OV221 [QUMR]
223370
223297
-
Cys
GCA
[ENA]
¡û
>C151073901
CP010892
Gammaproteobacteria
Pseudomonas sp. MRSN 12121 MRSN12121 [CP010892]
4013267
4013194
-
Cys
GCA
[Ensembl]
¡û
>C151074377
CP010945
Gammaproteobacteria
Pseudomonas fluorescens NCIMB 11764 [CP010945]
4256999
4257072
+
Cys
GCA
-
¡û
>W1511366871
JSFK01000033
Gammaproteobacteria
Pseudomonas chlororaphis EA105 [JSFK]
38591
38518
-
Cys
GCA
[ENA]
¡û
>W1511503011
JXDG01000031
Gammaproteobacteria
Pseudomonas batumici UCM B-321 [JXDG]
1685
1612
-
Cys
GCA
[ENA]
¡û
>C161066830
CP014135
Gammaproteobacteria
Pseudomonas agarici NCPPB 2472 [CP014135]
4605476
4605403
-
Cys
GCA
[Ensembl]
¡û
>W121048055
AIEU01000169
Gammaproteobacteria
Pseudomonas fuscovaginae UPB0736 [AIEU]
7485
7412
-
Cys
GCA
[ENA]
¡û
>W121070844
AJXJ01000091
Gammaproteobacteria
Pseudomonas fluorescens NZ011 [AJXJ]
10689
10762
+
Cys
GCA
[ENA]
¡û
>W121076617
AKBP01000955
Gammaproteobacteria
Pseudomonas gingeri NCPPB 3146 [AKBP]
4143
4216
+
Cys
GCA
[ENA]
¡û
>W121076664
AKBQ01000523
Gammaproteobacteria
Pseudomonas agarici NCPPB 2289 [AKBQ]
397
324
-
Cys
GCA
[ENA]
¡û
>W121085617
AKJI01000057
Gammaproteobacteria
Pseudomonas sp. GM60 [AKJI]
28571
28644
+
Cys
GCA
[ENA]
¡û
>W121085896
AKJN01000087
Gammaproteobacteria
Pseudomonas sp. GM41(2012) [AKJN]
24854
24927
+
Cys
GCA
[ENA]
¡û
>W121086314
AKJV01000019
Gammaproteobacteria
Pseudomonas sp. GM16 [AKJV]
81597
81524
-
Cys
GCA
[ENA]
¡û
>W121104746
ALAQ01000090
Gammaproteobacteria
Pseudomonas fuscovaginae CB98818 [ALAQ]
3065
3138
+
Cys
GCA
[ENA]
¡û
>W1610541396
JSYZ01000025
Gammaproteobacteria
Pseudomonas fuscovaginae [JSYZ]
4542
4469
-
Cys
GCA
[ENA]
¡û
>W1610541442
JTBY01000154
Gammaproteobacteria
Pseudomonas fuscovaginae [JTBY]
6998
7071
+
Cys
GCA
[ENA]
¡û
>W1610607736
LFUT01000006
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium [LFUT]
356707
356634
-
Cys
GCA
[ENA]
¡û
>W1610620779
LHPC01000038
Gammaproteobacteria
Pseudomonas sp. RIT-PI-q [LHPC]
71744
71671
-
Cys
GCA
[ENA]
¡û
>W1610740817
LMQZ01000001
Gammaproteobacteria
Pseudomonas sp. Leaf434 [LMQZ]
1848131
1848204
+
Cys
GCA
[ENA]
¡û
>W1710076170
BDAG01000012
Gammaproteobacteria
Pseudomonas migulae NBRC 103157 [BDAG]
71340
71267
-
Cys
GCA
[ENA]
¡û
>W1710536478
FNTF01000002
Gammaproteobacteria
Pseudomonas frederiksbergensis [FNTF]
4422141
4422068
-
Cys
GCA
[ENA]
¡û
>W1710544228
FOAR01000007
Gammaproteobacteria
Pseudomonas agarici [FOAR]
228028
228101
+
Cys
GCA
[ENA]
¡û
>W1710546234
FOCB01000002
Gammaproteobacteria
Pseudomonas sp. ok272 [FOCB]
204938
204865
-
Cys
GCA
[ENA]
¡û
>W1710547264
FOCU01000004
Gammaproteobacteria
Pseudomonas sp. ok266 [FOCU]
216801
216874
+
Cys
GCA
[ENA]
¡û
>W1710644527
JSYZ01000025
Gammaproteobacteria
Pseudomonas fuscovaginae [JSYZ]
4542
4469
-
Cys
GCA
[ENA]
¡û
>W1710644573
JTBY01000154
Gammaproteobacteria
Pseudomonas fuscovaginae [JTBY]
6998
7071
+
Cys
GCA
[ENA]
¡û
>W1710729023
LFUT01000006
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium [LFUT]
356707
356634
-
Cys
GCA
[ENA]
¡û
>W1710748473
LHPC01000038
Gammaproteobacteria
Pseudomonas sp. RIT-PI-q [LHPC]
71744
71671
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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