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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.486355 (18 seq.)
>W1710806119
LKAQ01000004
Thermodesulfobacteriota
Pseudodesulfovibrio hydrargyri dechloracetivorans [LKAQ]
1588987
1589062
+
Ala
TGC
[ENA]
¡û
>WENV180042836
LQAG01003628
[LQAG] bioreactor metagenome; bioreactor_3 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
297
222
-
Ala
TGC
[ENA]
¢þ
>WENV180043122
LQAH01002958
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
2122
2047
-
Ala
TGC
[ENA]
¢þ
>WENV180043582
LQAI01001310
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
2144
2069
-
Ala
TGC
[ENA]
¢þ
>WENV180044057
LQAJ01000713
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
3327
3252
-
Ala
TGC
[ENA]
¢þ
>WENV183708877
PDWI01020882
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
8023
8098
+
Ala
TGC
[ENA]
¢þ
>WENV183747704
PPCM01019526
[PPCM] marine sediment metagenome; marine sediment
68
143
+
Ala
TGC
[ENA]
¢þ
>WENV170647542
JQIA01034578
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
247
322
+
Ala
TGC
[ENA]
¢þ
>WENV170656047
JTFN01120593
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
240
165
-
Ala
TGC
[ENA]
¢þ
>WENV170657478
JTFO01163745
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
353
278
-
Ala
TGC
[ENA]
¢þ
>W1911738035
QTZO01000038
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
1781
1856
+
Ala
TGC
[ENA]
¡û
>W11149098
AEUJ01000001
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
275269
275344
+
Ala
TGC
[ENA]
¡û
>W11149133
AEUJ01000005
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
814191
814266
+
Ala
TGC
[ENA]
¡û
>C121008966
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
275269
275344
+
Ala
TGC
[Ensembl]
¡û
>C121008986
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
3089463
3089538
+
Ala
TGC
[Ensembl]
¡û
>C131017909
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
309215
309290
+
Ala
TGC
[Ensembl]
¡û
>C131017929
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
2783131
2783206
+
Ala
TGC
[Ensembl]
¡û
>C131017946
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
1438051
1437976
-
Ala
TGC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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