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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.486373 (131 seq.)
>W1710874373
LMNO01000001
Actinomycetota
Rathayibacter sp. Leaf294 [LMNO]
436834
436907
+
Gly
CCC
[ENA]
¡û
>W1710874525
LMNR01000001
Actinomycetota
Rathayibacter sp. Leaf296 [LMNR]
626761
626688
-
Gly
CCC
[ENA]
¡û
>W1710874599
LMNT01000001
Actinomycetota
Rathayibacter sp. Leaf299 [LMNT]
744598
744525
-
Gly
CCC
[ENA]
¡û
>W1710876838
LMPP01000001
Actinomycetota
Rathayibacter sp. Leaf185 [LMPP]
436697
436770
+
Gly
CCC
[ENA]
¡û
>W131224978
AUDF01000002
Actinomycetota
Rathayibacter toxicus DSM 7488 [AUDF]
416222
416295
+
Gly
CCC
[ENA]
¡û
>W1711747225
MUKN01000062
Actinomycetota
Rathayibacter sp. VKM Ac-2630 [MUKN]
17975
17902
-
Gly
CCC
[ENA]
¡û
>WENV180209869
OBAL01032101
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
2
73
+
Gly
CCC
[ENA]
¢þ
>WENV180380463
OBOQ01068013
[OBOQ] marine metagenome; Fridge
244
173
-
Gly
CCC
[ENA]
¢þ
>WENV180391581
OBPN01009038
[OBPN] marine metagenome; seawater
337
408
+
Gly
CCC
[ENA]
¢þ
>WENV181126183
OEFV01015432
[OEFV] marine metagenome; Particulate matter on a 0.22 Um pore size filter
327
256
-
Gly
CCC
[ENA]
¢þ
>C191056241
CP028129
Actinomycetota
Rathayibacter rathayi DSM 7485 [CP028129]
82689
82617
-
Gly
CCC
-
¡û
>C191056258
CP028130
Actinomycetota
Rathayibacter iranicus NCCPB 2253 [CP028130]
2242163
2242236
+
Gly
CCC
-
¡û
>C191056518
CP028137
Actinomycetota
Rathayibacter festucae DSM 15932 [CP028137]
4276700
4276628
-
Gly
CCC
-
¡û
>W1911497487
OCNL01000003
Actinomycetota
Rathayibacter rathayi VKM Ac-1601 [OCNL]
107384
107312
-
Gly
CCC
[ENA]
¡û
>W1810276995
PSTL01000019
Actinomycetota
Rathayibacter sp. AY1A7 [PSTL]
10129
10058
-
Gly
CCC
[ENA]
¡û
>W1810277009
PSTM01000004
Actinomycetota
Rathayibacter sp. AY1A5 [PSTM]
149719
149790
+
Gly
CCC
[ENA]
¡û
>W1810277076
PSTN01000019
Actinomycetota
Rathayibacter sp. AY1A4 [PSTN]
62237
62308
+
Gly
CCC
[ENA]
¡û
>W1810277109
PSTO01000009
Actinomycetota
Rathayibacter sp. AY1A3 [PSTO]
52881
52810
-
Gly
CCC
[ENA]
¡û
>W1810277156
PSTP01000007
Actinomycetota
Rathayibacter sp. AY1A2 [PSTP]
174
102
-
Gly
CCC
[ENA]
¡û
>W1810277691
PSUB01000003
Actinomycetota
Rathayibacter sp. AY2B9 [PSUB]
144547
144618
+
Gly
CCC
[ENA]
¡û
>W1810277725
PSUC01000005
Actinomycetota
Rathayibacter sp. AY2B7 [PSUC]
27051
27122
+
Gly
CCC
[ENA]
¡û
>W1810277780
PSUD01000010
Actinomycetota
Rathayibacter rathayi AY2B6 [PSUD]
51611
51683
+
Gly
CCC
[ENA]
¡û
>W1810277814
PSUE01000004
Actinomycetota
Rathayibacter sp. AY2B5 [PSUE]
61099
61028
-
Gly
CCC
[ENA]
¡û
>W1810277854
PSUF01000002
Actinomycetota
Rathayibacter rathayi AY2B4 [PSUF]
25777
25705
-
Gly
CCC
[ENA]
¡û
>W1810277910
PSUG01000015
Actinomycetota
Rathayibacter sp. AY2B3 [PSUG]
42692
42621
-
Gly
CCC
[ENA]
¡û
>W1810277935
PSUH01000003
Actinomycetota
Rathayibacter sp. AY2B1 [PSUH]
11697
11626
-
Gly
CCC
[ENA]
¡û
>W1810277989
PSUI01000007
Actinomycetota
Rathayibacter rathayi AY2A9 [PSUI]
46637
46565
-
Gly
CCC
[ENA]
¡û
>W1810278020
PSUJ01000003
Actinomycetota
Rathayibacter rathayi AY2A5 [PSUJ]
133862
133934
+
Gly
CCC
[ENA]
¡û
>W1810278083
PSUK01000018
Actinomycetota
Rathayibacter rathayi AY2A3 [PSUK]
51704
51776
+
Gly
CCC
[ENA]
¡û
>W1810278112
PSUL01000004
Actinomycetota
Rathayibacter rathayi AY1I9 [PSUL]
4848
4776
-
Gly
CCC
[ENA]
¡û
>W1810278178
PSUM01000035
Actinomycetota
Rathayibacter tritici ATCC 11402 [PSUM]
19019
18946
-
Gly
CCC
[ENA]
¡û
>W1810278218
PSUN01000010
Actinomycetota
Rathayibacter tritici GSPB 2752 [PSUN]
19005
18932
-
Gly
CCC
[ENA]
¡û
>W1810278272
PSUO01000018
Actinomycetota
Rathayibacter tritici GSPB 2748 [PSUO]
44589
44516
-
Gly
CCC
[ENA]
¡û
>W1810278303
PSUP01000017
Actinomycetota
Rathayibacter rathayi ICMP 2576 [PSUP]
51667
51739
+
Gly
CCC
[ENA]
¡û
>W1810278321
PSUQ01000002
Actinomycetota
Rathayibacter rathayi ICMP 2572 [PSUQ]
46528
46456
-
Gly
CCC
[ENA]
¡û
>W1810278385
PSUR01000018
Actinomycetota
Rathayibacter rathayi AY1H7 [PSUR]
51676
51748
+
Gly
CCC
[ENA]
¡û
>W1810278428
PSUS01000010
Actinomycetota
Rathayibacter rathayi AY1H6 [PSUS]
47436
47508
+
Gly
CCC
[ENA]
¡û
>W1810278454
PSUT01000003
Actinomycetota
Rathayibacter rathayi AY1H5 [PSUT]
124764
124836
+
Gly
CCC
[ENA]
¡û
>W1810278496
PSUU01000004
Actinomycetota
Rathayibacter sp. AY1H3 [PSUU]
103000
103071
+
Gly
CCC
[ENA]
¡û
>W1810278560
PSUV01000011
Actinomycetota
Rathayibacter sp. AY1H2 [PSUV]
61130
61059
-
Gly
CCC
[ENA]
¡û
>W1810278592
PSUW01000005
Actinomycetota
Rathayibacter sp. AY1G9 [PSUW]
39936
39865
-
Gly
CCC
[ENA]
¡û
>W1810278641
PSUX01000014
Actinomycetota
Rathayibacter rathayi AY1G7 [PSUX]
51613
51685
+
Gly
CCC
[ENA]
¡û
>W1810278668
PSUY01000002
Actinomycetota
Rathayibacter rathayi AY1G4 [PSUY]
292052
292124
+
Gly
CCC
[ENA]
¡û
>W1810278719
PSUZ01000006
Actinomycetota
Rathayibacter sp. AY1G1 [PSUZ]
62003
61932
-
Gly
CCC
[ENA]
¡û
>W1810278776
PSVA01000010
Actinomycetota
Rathayibacter sp. AY1F9 [PSVA]
51804
51733
-
Gly
CCC
[ENA]
¡û
>W1810278809
PSVB01000005
Actinomycetota
Rathayibacter sp. AY1F8 [PSVB]
149072
149143
+
Gly
CCC
[ENA]
¡û
>W1810278848
PSVC01000004
Actinomycetota
Rathayibacter sp. AY1F7 [PSVC]
143570
143641
+
Gly
CCC
[ENA]
¡û
>W1810278893
PSVD01000004
Actinomycetota
Rathayibacter sp. AY1F6 [PSVD]
107932
107861
-
Gly
CCC
[ENA]
¡û
>W1810278957
PSVE01000013
Actinomycetota
Rathayibacter sp. AY1F4 [PSVE]
62290
62361
+
Gly
CCC
[ENA]
¡û
>W1810278976
PSVF01000005
Actinomycetota
Rathayibacter sp. AY1F3 [PSVF]
145061
145132
+
Gly
CCC
[ENA]
¡û
>W1810279019
PSVG01000003
Actinomycetota
Rathayibacter sp. AY1F2 [PSVG]
143037
142966
-
Gly
CCC
[ENA]
¡û
>W1810279063
PSVH01000003
Actinomycetota
Rathayibacter sp. AY1E9 [PSVH]
156476
156547
+
Gly
CCC
[ENA]
¡û
>W1810279119
PSVI01000016
Actinomycetota
Rathayibacter sp. AY1E8 [PSVI]
39232
39161
-
Gly
CCC
[ENA]
¡û
>W1810279139
PSVJ01000001
Actinomycetota
Rathayibacter rathayi AY1E7 [PSVJ]
242956
243028
+
Gly
CCC
[ENA]
¡û
>W1810279199
PSVK01000005
Actinomycetota
Rathayibacter sp. AY1E6 [PSVK]
61653
61582
-
Gly
CCC
[ENA]
¡û
>W1810279236
PSVL01000008
Actinomycetota
Rathayibacter sp. AY1E5 [PSVL]
102653
102724
+
Gly
CCC
[ENA]
¡û
>W1810279267
PSVM01000001
Actinomycetota
Rathayibacter sp. AY1E4 [PSVM]
144127
144198
+
Gly
CCC
[ENA]
¡û
>W1810279330
PSVN01000006
Actinomycetota
Rathayibacter sp. AY1E3 [PSVN]
144620
144691
+
Gly
CCC
[ENA]
¡û
>W1810279368
PSVO01000004
Actinomycetota
Rathayibacter sp. AY1E2 [PSVO]
145636
145707
+
Gly
CCC
[ENA]
¡û
>W1810279395
PSVP01000002
Actinomycetota
Rathayibacter sp. AY1E1 [PSVP]
8966
8895
-
Gly
CCC
[ENA]
¡û
>W1810279476
PSVQ01000030
Actinomycetota
Rathayibacter sp. AY1D9 [PSVQ]
30701
30772
+
Gly
CCC
[ENA]
¡û
>W1810279484
PSVR01000003
Actinomycetota
Rathayibacter rathayi AY1D8 [PSVR]
125226
125298
+
Gly
CCC
[ENA]
¡û
>W1810279549
PSVS01000046
Actinomycetota
Rathayibacter sp. AY1D7 [PSVS]
18036
18107
+
Gly
CCC
[ENA]
¡û
>W1810279596
PSVT01000021
Actinomycetota
Rathayibacter rathayi AY1D6 [PSVT]
4824
4752
-
Gly
CCC
[ENA]
¡û
>W1810279623
PSVU01000013
Actinomycetota
Rathayibacter sp. AY1D5 [PSVU]
62253
62324
+
Gly
CCC
[ENA]
¡û
>W1810279661
PSVV01000003
Actinomycetota
Rathayibacter sp. AY1D4 [PSVV]
86410
86339
-
Gly
CCC
[ENA]
¡û
>W1810279715
PSVW01000005
Actinomycetota
Rathayibacter sp. AY1D3 [PSVW]
144647
144718
+
Gly
CCC
[ENA]
¡û
>W1810279772
PSVX01000050
Actinomycetota
Rathayibacter sp. AY1D2 [PSVX]
9484
9413
-
Gly
CCC
[ENA]
¡û
>W1810279798
PSVY01000004
Actinomycetota
Rathayibacter sp. AY1D1 [PSVY]
144486
144557
+
Gly
CCC
[ENA]
¡û
>W1810279863
PSVZ01000019
Actinomycetota
Rathayibacter sp. AY1C9 [PSVZ]
30661
30732
+
Gly
CCC
[ENA]
¡û
>W1810279894
PSWA01000010
Actinomycetota
Rathayibacter rathayi AY1C8 [PSWA]
47521
47593
+
Gly
CCC
[ENA]
¡û
>W1810279938
PSWB01000011
Actinomycetota
Rathayibacter sp. AY1C7 [PSWB]
97121
97192
+
Gly
CCC
[ENA]
¡û
>W1810279965
PSWC01000004
Actinomycetota
Rathayibacter sp. AY1C6 [PSWC]
74202
74131
-
Gly
CCC
[ENA]
¡û
>W1810280026
PSWD01000007
Actinomycetota
Rathayibacter sp. AY1C5 [PSWD]
30707
30778
+
Gly
CCC
[ENA]
¡û
>W1810280050
PSWE01000004
Actinomycetota
Rathayibacter sp. AY1C4 [PSWE]
102575
102646
+
Gly
CCC
[ENA]
¡û
>W1810280114
PSWF01000016
Actinomycetota
Rathayibacter sp. AY1C3 [PSWF]
9526
9455
-
Gly
CCC
[ENA]
¡û
>W1810280140
PSWG01000004
Actinomycetota
Rathayibacter sp. AY1C2 [PSWG]
60435
60364
-
Gly
CCC
[ENA]
¡û
>W1810280185
PSWH01000006
Actinomycetota
Rathayibacter sp. AY1C1 [PSWH]
52259
52188
-
Gly
CCC
[ENA]
¡û
>W1810280236
PSWI01000012
Actinomycetota
Rathayibacter rathayi AY1B9 [PSWI]
4820
4748
-
Gly
CCC
[ENA]
¡û
>W1810280269
PSWJ01000004
Actinomycetota
Rathayibacter sp. AY1B8 [PSWJ]
62373
62446
+
Gly
CCC
[ENA]
¡û
>W1810280305
PSWK01000002
Actinomycetota
Rathayibacter sp. AY1B7 [PSWK]
60931
60860
-
Gly
CCC
[ENA]
¡û
>W1810280357
PSWL01000008
Actinomycetota
Rathayibacter sp. AY1B6 [PSWL]
62516
62587
+
Gly
CCC
[ENA]
¡û
>W1810280411
PSWM01000009
Actinomycetota
Rathayibacter sp. AY1B5 [PSWM]
55243
55172
-
Gly
CCC
[ENA]
¡û
>W1810280468
PSWN01000017
Actinomycetota
Rathayibacter sp. AY1B4 [PSWN]
62431
62502
+
Gly
CCC
[ENA]
¡û
>W1810280480
PSWO01000004
Actinomycetota
Rathayibacter sp. AY1B1 [PSWO]
113033
113104
+
Gly
CCC
[ENA]
¡û
>W1810280529
PSWP01000010
Actinomycetota
Rathayibacter rathayi AY1A8 [PSWP]
25787
25715
-
Gly
CCC
[ENA]
¡û
>W1810280565
PSWQ01000014
Actinomycetota
Rathayibacter sp. RFBD1 [PSWQ]
73715
73644
-
Gly
CCC
[ENA]
¡û
>W1810280620
PSWR01000065
Actinomycetota
Rathayibacter sp. TRS19 [PSWR]
9988
9917
-
Gly
CCC
[ENA]
¡û
>W1810280663
PSWS01000038
Actinomycetota
Rathayibacter tritici DSM 7486 [PSWS]
18975
18902
-
Gly
CCC
[ENA]
¡û
>W1810280706
PSWT01000033
Actinomycetota
Rathayibacter tritici ICMP 2628 [PSWT]
19185
19112
-
Gly
CCC
[ENA]
¡û
>W1810280765
PSWU01000004
Actinomycetota
Rathayibacter toxicus FH99 [PSWU]
80470
80398
-
Gly
CCC
[ENA]
¡û
>W1810280808
PSWV01000005
Actinomycetota
Rathayibacter toxicus FH89 [PSWV]
79601
79529
-
Gly
CCC
[ENA]
¡û
>W1810280851
PSWW01000005
Actinomycetota
Rathayibacter toxicus FH86 [PSWW]
79601
79529
-
Gly
CCC
[ENA]
¡û
>W1810280894
PSWX01000004
Actinomycetota
Rathayibacter toxicus FH85 [PSWX]
80472
80400
-
Gly
CCC
[ENA]
¡û
>W1810280937
PSWY01000005
Actinomycetota
Rathayibacter toxicus FH82 [PSWY]
77027
76955
-
Gly
CCC
[ENA]
¡û
>W1810280980
PSWZ01000004
Actinomycetota
Rathayibacter toxicus FH81 [PSWZ]
79972
79900
-
Gly
CCC
[ENA]
¡û
>W1810281023
PSXA01000003
Actinomycetota
Rathayibacter toxicus FH78 [PSXA]
74557
74485
-
Gly
CCC
[ENA]
¡û
>W1810281066
PSXB01000002
Actinomycetota
Rathayibacter toxicus FH183 [PSXB]
141192
141120
-
Gly
CCC
[ENA]
¡û
>W1810281121
PSXC01000005
Actinomycetota
Rathayibacter toxicus FH149 [PSXC]
79336
79264
-
Gly
CCC
[ENA]
¡û
>W1810281164
PSXD01000003
Actinomycetota
Rathayibacter toxicus FH147 [PSXD]
80471
80399
-
Gly
CCC
[ENA]
¡û
>W1810281207
PSXE01000005
Actinomycetota
Rathayibacter toxicus FH146 [PSXE]
79972
79900
-
Gly
CCC
[ENA]
¡û
>W1810281250
PSXF01000004
Actinomycetota
Rathayibacter toxicus FH145 [PSXF]
76928
76856
-
Gly
CCC
[ENA]
¡û
>W1810281293
PSXG01000004
Actinomycetota
Rathayibacter toxicus FH142 [PSXG]
79601
79529
-
Gly
CCC
[ENA]
¡û
>W1810281336
PSXH01000003
Actinomycetota
Rathayibacter toxicus FH141 [PSXH]
80633
80561
-
Gly
CCC
[ENA]
¡û
>W1810281379
PSXI01000005
Actinomycetota
Rathayibacter toxicus FH140 [PSXI]
79972
79900
-
Gly
CCC
[ENA]
¡û
>W1810281423
PSXJ01000005
Actinomycetota
Rathayibacter toxicus FH139 [PSXJ]
79601
79529
-
Gly
CCC
[ENA]
¡û
>W1810281466
PSXK01000005
Actinomycetota
Rathayibacter toxicus FH138 [PSXK]
79336
79264
-
Gly
CCC
[ENA]
¡û
>W1810281509
PSXL01000004
Actinomycetota
Rathayibacter toxicus FH137 [PSXL]
80470
80398
-
Gly
CCC
[ENA]
¡û
>W1810281549
PSXM01000004
Actinomycetota
Rathayibacter toxicus FH128 [PSXM]
78746
78674
-
Gly
CCC
[ENA]
¡û
>W1810281584
PSXN01000005
Actinomycetota
Rathayibacter toxicus FH100 [PSXN]
77032
76960
-
Gly
CCC
[ENA]
¡û
>W1810281625
PSXO01000008
Actinomycetota
Rathayibacter rathayi Z022 [PSXO]
4837
4765
-
Gly
CCC
[ENA]
¡û
>W1810281668
PSXP01000002
Actinomycetota
Rathayibacter rathayi Z015 [PSXP]
64530
64458
-
Gly
CCC
[ENA]
¡û
>W1810281711
PSXQ01000009
Actinomycetota
Rathayibacter rathayi Z007 [PSXQ]
25784
25712
-
Gly
CCC
[ENA]
¡û
>W1810281754
PSXR01000008
Actinomycetota
Rathayibacter rathayi CS6 [PSXR]
4819
4747
-
Gly
CCC
[ENA]
¡û
>W1810281826
PSXS01000030
Actinomycetota
Rathayibacter iranicus DSM 7484 [PSXS]
218975
219048
+
Gly
CCC
[ENA]
¡û
>W1810281871
PSXT01000038
Actinomycetota
Rathayibacter iranicus TRS5 [PSXT]
10090
10163
+
Gly
CCC
[ENA]
¡û
>W1810281914
PSXU01000045
Actinomycetota
Rathayibacter iranicus FH154 [PSXU]
10101
10174
+
Gly
CCC
[ENA]
¡û
>W1810281935
PSXV01000007
Actinomycetota
Rathayibacter sp. AY1A1 [PSXV]
62294
62365
+
Gly
CCC
[ENA]
¡û
>W1810452341
PZPL01000001
Actinomycetota
Rathayibacter caricis DSM 15933 [PZPL]
1761916
1761844
-
Gly
CCC
[ENA]
¡û
>W1810595372
QGDV01000003
Actinomycetota
Rathayibacter iranicus VKM Ac-1602 [QGDV]
49024
48951
-
Gly
CCC
[ENA]
¡û
>C151073266
CP010848
Actinomycetota
Rathayibacter toxicus 70137 [CP010848]
433175
433102
-
Gly
CCC
[Ensembl]
¡û
>W1511589852
LBFI01000024
Actinomycetota
Rathayibacter toxicus FH142 [LBFI]
77984
77911
-
Gly
CCC
[ENA]
¡û
>C161054995
CP013292
Actinomycetota
Rathayibacter toxicus WAC3373 [CP013292]
995073
995146
+
Gly
CCC
-
¡û
>C161089177
CP015515
Actinomycetota
Rathayibacter tritici NCPPB 1953 [CP015515]
418899
418826
-
Gly
CCC
[Ensembl]
¡û
>W1610630627
LIIN01000129
Actinomycetota
Rathayibacter tanaceti [LIIN]
3388
3459
+
Gly
CCC
[ENA]
¡û
>W1610736719
LMNO01000001
Actinomycetota
Rathayibacter sp. Leaf294 [LMNO]
436834
436907
+
Gly
CCC
[ENA]
¡û
>W1610736871
LMNR01000001
Actinomycetota
Rathayibacter sp. Leaf296 [LMNR]
626761
626688
-
Gly
CCC
[ENA]
¡û
>W1610736945
LMNT01000001
Actinomycetota
Rathayibacter sp. Leaf299 [LMNT]
744598
744525
-
Gly
CCC
[ENA]
¡û
>W1610739184
LMPP01000001
Actinomycetota
Rathayibacter sp. Leaf185 [LMPP]
436697
436770
+
Gly
CCC
[ENA]
¡û
>W1710608949
FXBM01000001
Actinomycetota
Rathayibacter oskolensis VKM Ac-2121 [FXBM]
250886
250813
-
Gly
CCC
[ENA]
¡û
>W1710761766
LIIN01000129
Actinomycetota
Rathayibacter tanaceti [LIIN]
3388
3459
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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