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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.486439 (72 seq.)
>W1711055111
LRUI01000009
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
122204
122131
-
Cys
GCA
[ENA]
¡û
>W131241484
BARX01000007
Gammaproteobacteria
Agarivorans albus MKT 106 [BARX]
483
410
-
Cys
GCA
[ENA]
¡û
>W1712070451
NGNS01000005
Gammaproteobacteria
Neiella marina [NGNS]
161256
161329
+
Cys
GCA
[ENA]
¡û
>C171066080
CP017689
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [CP017689]
1893482
1893555
+
Cys
GCA
-
¡û
>w001106
ABCQ01000004
Gammaproteobacteria
Moritella sp. PE36 [ABCQ]
175330
175257
-
Cys
GCA
[ENA]
¡û
>w001105
ABCQ01000004
Gammaproteobacteria
Moritella sp. PE36 [ABCQ]
175014
174941
-
Cys
GCA
[ENA]
¡û
>w001104
ABCQ01000004
Gammaproteobacteria
Moritella sp. PE36 [ABCQ]
174700
174627
-
Cys
GCA
[ENA]
¡û
>WENV170782502
MAAC01010171
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
468488
468415
-
Cys
GCA
[ENA]
¢þ
>C183003775
LS483250
Gammaproteobacteria
Moritella yayanosii DB21MT 5 [LS483250]
4209017
4209090
+
Cys
GCA
-
¡û
>C183003776
LS483250
Gammaproteobacteria
Moritella yayanosii DB21MT 5 [LS483250]
4209352
4209425
+
Cys
GCA
-
¡û
>C183003777
LS483250
Gammaproteobacteria
Moritella yayanosii DB21MT 5 [LS483250]
4209687
4209760
+
Cys
GCA
-
¡û
>C181177225
CP029347
Gammaproteobacteria
Saliniradius amylolyticus HMF8227 [CP029347]
1331540
1331613
+
Cys
GCA
-
¡û
>C191130494
CP034759
Gammaproteobacteria
Litorilituus sediminis JCM 17549 [CP034759]
1022998
1022925
-
Cys
GCA
-
¡û
>C191160600
CP038493
Gammaproteobacteria
Thalassotalea sp. HSM 43 [CP038493]
2057
1984
-
Cys
GCA
-
¡û
>W1930004029
FPLD01000051
Gammaproteobacteria
Moritella viscosa [FPLD]
125
52
-
Cys
GCA
[ENA]
¡û
>W1930004032
FPLE01000056
Gammaproteobacteria
Moritella viscosa [FPLE]
57218
57145
-
Cys
GCA
[ENA]
¡û
>W1930004033
FPLE01000056
Gammaproteobacteria
Moritella viscosa [FPLE]
56907
56834
-
Cys
GCA
[ENA]
¡û
>W1930004034
FPLE01000056
Gammaproteobacteria
Moritella viscosa [FPLE]
43425
43352
-
Cys
GCA
[ENA]
¡û
>W1930004040
FPLF01000058
Gammaproteobacteria
Moritella viscosa [FPLF]
13637
13564
-
Cys
GCA
[ENA]
¡û
>W1930004041
FPLF01000058
Gammaproteobacteria
Moritella viscosa [FPLF]
13326
13253
-
Cys
GCA
[ENA]
¡û
>W1930004047
FPLG01000052
Gammaproteobacteria
Moritella viscosa [FPLG]
101682
101609
-
Cys
GCA
[ENA]
¡û
>W1930004048
FPLG01000052
Gammaproteobacteria
Moritella viscosa [FPLG]
88200
88127
-
Cys
GCA
[ENA]
¡û
>W1930004057
FPLJ01000039
Gammaproteobacteria
Moritella viscosa [FPLJ]
147413
147340
-
Cys
GCA
[ENA]
¡û
>W1930004058
FPLJ01000039
Gammaproteobacteria
Moritella viscosa [FPLJ]
147102
147029
-
Cys
GCA
[ENA]
¡û
>W1930004059
FPLJ01000039
Gammaproteobacteria
Moritella viscosa [FPLJ]
133620
133547
-
Cys
GCA
[ENA]
¡û
>W1930005107
FRDQ01000054
Gammaproteobacteria
Moritella viscosa [FRDQ]
95917
95844
-
Cys
GCA
[ENA]
¡û
>W1930005110
FRDQ01000153
Gammaproteobacteria
Moritella viscosa [FRDQ]
9728
9655
-
Cys
GCA
[ENA]
¡û
>W1930005114
FRDR01000072
Gammaproteobacteria
Moritella viscosa [FRDR]
118779
118706
-
Cys
GCA
[ENA]
¡û
>W1930005115
FRDR01000072
Gammaproteobacteria
Moritella viscosa [FRDR]
118468
118395
-
Cys
GCA
[ENA]
¡û
>W1930005116
FRDR01000072
Gammaproteobacteria
Moritella viscosa [FRDR]
104986
104913
-
Cys
GCA
[ENA]
¡û
>W1930005120
FRDS01000060
Gammaproteobacteria
Moritella viscosa [FRDS]
65101
65028
-
Cys
GCA
[ENA]
¡û
>W1930005121
FRDS01000061
Gammaproteobacteria
Moritella viscosa [FRDS]
9517
9444
-
Cys
GCA
[ENA]
¡û
>W1930005127
FRDT01000051
Gammaproteobacteria
Moritella viscosa [FRDT]
95916
95843
-
Cys
GCA
[ENA]
¡û
>W1930005130
FRDT01000154
Gammaproteobacteria
Moritella viscosa [FRDT]
9517
9444
-
Cys
GCA
[ENA]
¡û
>W1930005132
FRDU01000065
Gammaproteobacteria
Moritella viscosa [FRDU]
65089
65016
-
Cys
GCA
[ENA]
¡û
>W1930005138
FRDV01000076
Gammaproteobacteria
Moritella viscosa [FRDV]
78455
78382
-
Cys
GCA
[ENA]
¡û
>W1930005139
FRDV01000076
Gammaproteobacteria
Moritella viscosa [FRDV]
78144
78071
-
Cys
GCA
[ENA]
¡û
>W1930005140
FRDV01000076
Gammaproteobacteria
Moritella viscosa [FRDV]
64665
64592
-
Cys
GCA
[ENA]
¡û
>W1930005145
FRDW01000036
Gammaproteobacteria
Moritella viscosa [FRDW]
147014
146941
-
Cys
GCA
[ENA]
¡û
>W1930005146
FRDW01000036
Gammaproteobacteria
Moritella viscosa [FRDW]
146703
146630
-
Cys
GCA
[ENA]
¡û
>W1930005147
FRDW01000036
Gammaproteobacteria
Moritella viscosa [FRDW]
133221
133148
-
Cys
GCA
[ENA]
¡û
>W1910178287
BJEQ01000018
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
89100
89173
+
Cys
GCA
[ENA]
¡û
>W1910178291
BJEQ01000018
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
89903
89976
+
Cys
GCA
[ENA]
¡û
>W1910796225
MSCH01000003
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
2778052
2777979
-
Cys
GCA
[ENA]
¡û
>W1911585132
PIPR01000001
Gammaproteobacteria
Pseudidiomarina aestuarii KYW314 [PIPR]
512714
512787
+
Cys
GCA
[ENA]
¡û
>W1911770237
QXIO01000009
Gammaproteobacteria
Colwellia sp. RSH04 [QXIO]
150699
150626
-
Cys
GCA
[ENA]
¡û
>W1810425701
PYVF01000019
Gammaproteobacteria
Pseudidiomarina aestuarii A12-4 [PYVF]
8043
8116
+
Cys
GCA
[ENA]
¡û
>W1810425905
PYVR01000001
Gammaproteobacteria
Pseudidiomarina aestuarii Z-E7-4 [PYVR]
12824
12897
+
Cys
GCA
[ENA]
¡û
>W1810758075
QPID01000001
Gammaproteobacteria
Corallincola holothuriorum C4 [QPID]
47720
47793
+
Cys
GCA
[ENA]
¡û
>W1810887031
QUOT01000001
Gammaproteobacteria
Thalassotalea euphylliae H3 [QUOT]
482904
482831
-
Cys
GCA
[ENA]
¡û
>W1810887113
QUOU01000001
Gammaproteobacteria
Thalassotalea euphylliae H1 [QUOU]
2458061
2457988
-
Cys
GCA
[ENA]
¡û
>W1810887122
QUOU01000001
Gammaproteobacteria
Thalassotalea euphylliae H1 [QUOU]
2456799
2456726
-
Cys
GCA
[ENA]
¡û
>W1810887206
QUOV01000001
Gammaproteobacteria
Thalassotalea euphylliae H2 [QUOV]
2259070
2258997
-
Cys
GCA
[ENA]
¡û
>W1810887215
QUOV01000001
Gammaproteobacteria
Thalassotalea euphylliae H2 [QUOV]
2257841
2257768
-
Cys
GCA
[ENA]
¡û
>W1830002785
PJCA01000001
Gammaproteobacteria
Moritella sp. Urea-trap-13 [PJCA]
243237
243164
-
Cys
GCA
[ENA]
¡û
>W1830002786
PJCA01000001
Gammaproteobacteria
Moritella sp. Urea-trap-13 [PJCA]
242922
242849
-
Cys
GCA
[ENA]
¡û
>W1830002787
PJCA01000001
Gammaproteobacteria
Moritella sp. Urea-trap-13 [PJCA]
242612
242539
-
Cys
GCA
[ENA]
¡û
>C153001417
LN554852
Gammaproteobacteria
Moritella viscosa [LN554852]
3821702
3821629
-
Cys
GCA
[Ensembl]
¡û
>C153001418
LN554852
Gammaproteobacteria
Moritella viscosa [LN554852]
3821391
3821318
-
Cys
GCA
[Ensembl]
¡û
>C153001419
LN554852
Gammaproteobacteria
Moritella viscosa [LN554852]
3807909
3807836
-
Cys
GCA
[Ensembl]
¡û
>W1511322706
JQDZ01000047
Gammaproteobacteria
Thalassotalea sp. ND16A [JQDZ]
43753
43680
-
Cys
GCA
[ENA]
¡û
>C161049687
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
670635
670562
-
Cys
GCA
-
¡û
>C161049691
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
669819
669746
-
Cys
GCA
-
¡û
>W123002511
AKXQ01000051
Gammaproteobacteria
Moritella dasanensis ArB 0140 [AKXQ]
99
172
+
Cys
GCA
[ENA]
¡û
>W1610896157
LRUI01000009
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
122204
122131
-
Cys
GCA
[ENA]
¡û
>W1630014178
LOCN01000001
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
302949
303022
+
Cys
GCA
[ENA]
¡û
>W1630014179
LOCN01000001
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
303264
303337
+
Cys
GCA
[ENA]
¡û
>W1730016815
LOCN01000001
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
302949
303022
+
Cys
GCA
[ENA]
¡û
>W1730016816
LOCN01000001
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
303264
303337
+
Cys
GCA
[ENA]
¡û
>W1710545244
FOBI01000005
Gammaproteobacteria
Colwellia chukchiensis [FOBI]
102490
102563
+
Cys
GCA
[ENA]
¡û
>W1710553210
FOHK01000006
Gammaproteobacteria
Thalassotalea agarivorans [FOHK]
314
241
-
Cys
GCA
[ENA]
¡û
>W1710609263
FXWH01000001
Gammaproteobacteria
Pseudidiomarina planktonica [FXWH]
1443176
1443103
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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