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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.48659 (28 seq.)
>W1710873852
LMNC01000006
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
207095
207006
-
Ser
CGA
[ENA]
¡û
>W1710876113
LMOY01000010
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
90697
90608
-
Ser
CGA
[ENA]
¡û
>W1711407983
MGLM01000508
Alphaproteobacteria
Caulobacterales bacterium RIFOXYA1_FULL_67_7 [MGLM]
2184
2095
-
Ser
CGA
[ENA]
¡û
>W1711408005
MGLN01000096
Alphaproteobacteria
Caulobacterales bacterium RIFOXYB1_FULL_67_16 [MGLN]
11193
11282
+
Ser
CGA
[ENA]
¡û
>C171094881
CP019508
Alphaproteobacteria
Brevundimonas sp. LM2 [CP019508]
1503550
1503461
-
Ser
CGA
-
¡û
>W131052429
AMYY01000011
Alphaproteobacteria
alpha proteobacterium L41A [AMYY]
41136
41225
+
Ser
CGA
[ENA]
¡û
>WENV181223390
OFDC01010730
[OFDC] hot springs metagenome; Water
2352
2441
+
Ser
CGA
[ENA]
¢þ
>WENV181227130
OFDN01002128
[OFDN] hot springs metagenome; Water
4695
4606
-
Ser
CGA
[ENA]
¢þ
>W08010822
ABRU01000031
Alphaproteobacteria
Brevundimonas sp. BAL3 [ABRU]
56307
56221
-
Ser
CGA
[ENA]
¡û
>WENV170003692
AGTN01417988
[AGTN] bioreactor metagenome; poplar biomass
19
108
+
Ser
CGA
[ENA]
¢þ
>WENV170010786
APMI01028944
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
382
471
+
Ser
CGA
[ENA]
¢þ
>WENV170838382
MDSZ01166767
[MDSZ] marine metagenome; seawater
112733
112822
+
Ser
CGA
[ENA]
¢þ
>C181056252
CP022048
Alphaproteobacteria
Brevundimonas vesicularis FDAARGOS_289 [CP022048]
2911085
2910996
-
Ser
CGA
-
¡û
>C191166131
CP039435
Alphaproteobacteria
Brevundimonas sp. SGAir0440 [CP039435]
1731208
1731119
-
Ser
CGA
-
¡û
>W141712426
JMQR01000003
Alphaproteobacteria
Brevundimonas sp. EAKA [JMQR]
55711
55622
-
Ser
CGA
[ENA]
¡û
>W10109839
ADBM01000002
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
86579
86668
+
Ser
CGA
[ENA]
¡û
>C10102206
CP002102
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [CP002102]
2419177
2419266
+
Ser
CGA
[Ensembl]
¡û
>W11112276
ADBM01000002
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
86579
86668
+
Ser
CGA
[ENA]
¡û
>W1511489479
JWSY01000023
Alphaproteobacteria
Brevundimonas nasdae TPW30 [JWSY]
52749
52660
-
Ser
CGA
[ENA]
¡û
>W1511547887
JZRG01000018
Alphaproteobacteria
Brevundimonas sp. KM4 [JZRG]
249240
249329
+
Ser
CGA
[ENA]
¡û
>C161047050
CP012897
Alphaproteobacteria
Brevundimonas sp. DS20 [CP012897]
2711524
2711613
+
Ser
CGA
[Ensembl]
¡û
>C161089103
CP015511
Alphaproteobacteria
Brevundimonas sp. GW460-12-10-14-LB2 [CP015511]
1519217
1519306
+
Ser
CGA
[Ensembl]
¡û
>W1610074201
BCWM01000001
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
77683
77772
+
Ser
CGA
[ENA]
¡û
>W1610736198
LMNC01000006
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
207095
207006
-
Ser
CGA
[ENA]
¡û
>W1610738459
LMOY01000010
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
90697
90608
-
Ser
CGA
[ENA]
¡û
>W1710071319
BCWM01000001
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
77683
77772
+
Ser
CGA
[ENA]
¡û
>W1710084608
BDMM01000001
Alphaproteobacteria
Brevundimonas sp. SH203 [BDMM]
463936
464025
+
Ser
CGA
[ENA]
¡û
>W1710527021
FNKT01000001
Alphaproteobacteria
Brevundimonas sp. 374 [FNKT]
759116
759205
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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