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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.4869 (51 seq.)
>W1710867094
LMHZ01000023
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
13525
13432
-
Ser
GCT
[ENA]
¡û
>W1711082090
LSTO01000001
Betaproteobacteria
Noviherbaspirillum denitrificans [LSTO]
2528755
2528662
-
Ser
GCT
[ENA]
¡û
>W131046007
AMSA01000003
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os45 [AMSA]
494003
493910
-
Ser
GCT
[ENA]
¡û
>W131046049
AMSB01000001
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os34 [AMSB]
506059
505966
-
Ser
GCT
[ENA]
¡û
>W131062291
ANJR01000025
Betaproteobacteria
Herbaspirillum huttiense subsp. putei IAM 15032 [ANJR]
228677
228770
+
Ser
GCT
[ENA]
¡û
>W1711430746
MIJG01000008
Betaproteobacteria
Herbaspirillum camelliae WT00C [MIJG]
329711
329618
-
Ser
GCT
[ENA]
¡û
>W1711765128
MUXB01000114
Betaproteobacteria
Herbaspirillum sp. VT-16-41 [MUXB]
229187
229094
-
Ser
GCT
[ENA]
¡û
>W1712110240
NJGU01000001
Betaproteobacteria
Herbaspirillum robiniae HZ10 [NJGU]
448341
448434
+
Ser
GCT
[ENA]
¡û
>W1712110311
NJGV01000002
Betaproteobacteria
Herbaspirillum aquaticum [NJGV]
239509
239416
-
Ser
GCT
[ENA]
¡û
>C171021240
CP013136
Betaproteobacteria
Herbaspirillum seropedicae AU14040 [CP013136]
2381421
2381328
-
Ser
GCT
-
¡û
>W131052471
AMYZ01000005
Betaproteobacteria
beta proteobacterium L13 [AMYZ]
73385
73292
-
Ser
GCT
[ENA]
¡û
>W141003816
AEEC02000007
Betaproteobacteria
Herbaspirillum frisingense GSF30 [AEEC]
71274
71367
+
Ser
GCT
[ENA]
¡û
>WENV180311229
OBJT01176662
[OBJT] soil metagenome; soil
214
307
+
Ser
GCT
[ENA]
¢þ
>WENV181221651
OFCW01000325
[OFCW] microbial mat metagenome; Microbial Mat
301
208
-
Ser
GCT
[ENA]
¢þ
>WENV181368470
OFQL01007496
[OFQL] freshwater metagenome; Freshwater Lake
622
715
+
Ser
GCT
[ENA]
¢þ
>WENV181368967
OFQN01006576
[OFQN] freshwater metagenome; Freshwater Lake
266
173
-
Ser
GCT
[ENA]
¢þ
>WENV181369936
OFQR01002656
[OFQR] freshwater metagenome; Freshwater Lake
1201
1294
+
Ser
GCT
[ENA]
¢þ
>WENV181384772
OFRI01009351
[OFRI] wastewater metagenome; Exp Tend VB 90WW
874
967
+
Ser
GCT
[ENA]
¢þ
>WENV181400351
OFSF01004994
[OFSF] wastewater metagenome; Exp Tend VB 100WW
297
204
-
Ser
GCT
[ENA]
¢þ
>WENV181838839
OGVN01025198
[OGVN] freshwater metagenome; freshwater
691
784
+
Ser
GCT
[ENA]
¢þ
>WENV183730177
PJTR01002096
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
260
353
+
Ser
GCT
[ENA]
¢þ
>WENV183733519
PJTY01003373
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
1553
1460
-
Ser
GCT
[ENA]
¢þ
>WENV183735083
PJUA01000809
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
10202
10109
-
Ser
GCT
[ENA]
¢þ
>WENV183735791
PJUB01002603
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
2738
2645
-
Ser
GCT
[ENA]
¢þ
>WENV183739229
PJUE01003870
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
2846
2753
-
Ser
GCT
[ENA]
¢þ
>WENV170165398
CEON01118600
[CEON] marine metagenome genome assembly TARA_034_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
361
454
+
Ser
GCT
[ENA]
¢þ
>WENV170201742
CEPQ01048467
[CEPQ] marine metagenome genome assembly TARA_038_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2314
2407
+
Ser
GCT
[ENA]
¢þ
>WENV170573180
FLYJ01002779
[FLYJ] hot springs metagenome; Sediment
1359
1266
-
Ser
GCT
[ENA]
¢þ
>WENV170840725
MDSZ01209831
[MDSZ] marine metagenome; seawater
358
451
+
Ser
GCT
[ENA]
¢þ
>C181071862
CP022736
Betaproteobacteria
Herbaspirillum sp. meg3 [CP022736]
2142915
2142822
-
Ser
GCT
-
¡û
>C191029371
CP024996
Betaproteobacteria
Herbaspirillum rubrisubalbicans DSM 11543 [CP024996]
2369084
2368991
-
Ser
GCT
-
¡û
>C191124268
CP034395
Betaproteobacteria
Herbaspirillum seropedicae AU13965 [CP034395]
2264179
2264086
-
Ser
GCT
-
¡û
>C191138939
CP035311
Betaproteobacteria
Janthinobacterium sp. 17J80-10 [CP035311]
2664263
2664170
-
Ser
GCT
-
¡û
>C191156658
CP037993
Betaproteobacteria
Herbaspirillum huttiense NFYY 53159 [CP037993]
2458920
2458827
-
Ser
GCT
-
¡û
>W1910015388
BDOQ01000006
Betaproteobacteria
Novimethylophilus kurashikiensis La2-4 [BDOQ]
217646
217553
-
Ser
GCT
[ENA]
¡û
>W1910548763
FZOT01000004
Betaproteobacteria
Noviherbaspirillum humi U15 [FZOT]
83060
83153
+
Ser
GCT
[ENA]
¡û
>W1910577836
JUGD01000003
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os38 [JUGD]
136641
136734
+
Ser
GCT
[ENA]
¡û
>W1910578292
JWJC01000006
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os44 [JWJC]
290042
290135
+
Ser
GCT
[ENA]
¡û
>W1911802728
QYUN01000002
Betaproteobacteria
Noviherbaspirillum cavernae K2R10-39 [QYUN]
1634840
1634933
+
Ser
GCT
[ENA]
¡û
>W1810194036
PKOI01000007
Betaproteobacteria
Herbaspirillum sp. BH-1 [PKOI]
129386
129479
+
Ser
GCT
[ENA]
¡û
>W1810887516
QUQN01000001
Betaproteobacteria
Herbaspirillum sp. 3R-3a1 [QUQN]
48338
48245
-
Ser
GCT
[ENA]
¡û
>C151087603
CP011930
Betaproteobacteria
Herbaspirillum seropedicae Z67 [CP011930]
2406078
2405985
-
Ser
GCT
[Ensembl]
¡û
>C151104250
LN827929
Betaproteobacteria
Candidatus Methylopumilus planktonicus MMS-10A-171 [LN827929]
1078645
1078738
+
Ser
GCT
[Ensembl]
¡û
>C10107836
CP002039
Betaproteobacteria
Herbaspirillum seropedicae SmR1 [CP002039]
2406249
2406156
-
Ser
GCT
[Ensembl]
¡û
>W1511480672
JWJG01000028
Betaproteobacteria
Noviherbaspirillum autotrophicum TSA66 [JWJG]
3484727
3484634
-
Ser
GCT
[ENA]
¡û
>W1511678856
LFDT01000009
Betaproteobacteria
Vogesella sp. EB [LFDT]
13793
13700
-
Ser
GCT
[ENA]
¡û
>C161060476
CP013737
Betaproteobacteria
Herbaspirillum rubrisubalbicans M1 [CP013737]
2315557
2315464
-
Ser
GCT
[Ensembl]
¡û
>W1610071864
BCUJ01000035
Betaproteobacteria
Herbaspirillum rubrisubalbicans NBRC 102523 [BCUJ]
4636
4543
-
Ser
GCT
[ENA]
¡û
>W121068713
AJVC01000003
Betaproteobacteria
Herbaspirillum sp. GW103 [AJVC]
885107
885014
-
Ser
GCT
[ENA]
¡û
>W1610729440
LMHZ01000023
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
13525
13432
-
Ser
GCT
[ENA]
¡û
>W1710069066
BCUJ01000035
Betaproteobacteria
Herbaspirillum rubrisubalbicans NBRC 102523 [BCUJ]
4636
4543
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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