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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.486926 (24 seq.)
>W1710796603
LJSG01000005
Alphaproteobacteria
Roseibaca calidilacus HL-91 [LJSG]
35052
34979
-
Gly
CCC
[ENA]
¡û
>W1710797159
LJSU01000024
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO07 [LJSU]
230957
231030
+
Gly
CCC
[ENA]
¡û
>W131242016
BASI01000002
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [BASI]
961927
961854
-
Gly
CCC
[ENA]
¡û
>W1711709210
MSYP01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYP]
1828227
1828154
-
Gly
CCC
[ENA]
¡û
>W1711709267
MSYR01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYR]
1634195
1634268
+
Gly
CCC
[ENA]
¡û
>C171105902
CP020384
Alphaproteobacteria
Rhodovulum sp. MB263 [CP020384]
2270096
2270169
+
Gly
CCC
-
¡û
>C023190
CP000031
Alphaproteobacteria
Ruegeria pomeroyi DSS-3 [CP000031]
2173838
2173911
+
Gly
CCC
[Ensembl]
¡û
>WENV181233782
OFET01000098
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
35009
34936
-
Gly
CCC
[ENA]
¢þ
>WENV181234378
OFEU01000081
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
35009
34936
-
Gly
CCC
[ENA]
¢þ
>WENV181234379
OFEU01000084
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
68614
68687
+
Gly
CCC
[ENA]
¢þ
>WENV170229748
CEQG01153484
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3067
3140
+
Gly
CCC
[ENA]
¢þ
>WENV170668369
LADL02003291
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
3851
3924
+
Gly
CCC
[ENA]
¢þ
>W1911539292
OMPR01000017
Alphaproteobacteria
Rhodobacteraceae bacterium EL53 [OMPR]
347578
347651
+
Gly
CCC
[ENA]
¡û
>W1810692299
QLIW01000007
Alphaproteobacteria
Rhodobacteraceae bacterium AsT-22 [QLIW]
69178
69105
-
Gly
CCC
[ENA]
¡û
>W1810724995
QOCE01000037
Alphaproteobacteria
Phaeobacter gallaeciensis C3M10 [QOCE]
62274
62201
-
Gly
CCC
[ENA]
¡û
>W1511640258
LDPY01000001
Alphaproteobacteria
Puniceibacterium sp. IMCC21224 [LDPY]
2248253
2248180
-
Gly
CCC
[ENA]
¡û
>C161001445
AP014800
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 2351 [AP014800]
2440674
2440747
+
Gly
CCC
[Ensembl]
¡û
>C161087745
CP015418
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [CP015418]
2416060
2415987
-
Gly
CCC
-
¡û
>C161087794
CP015421
Alphaproteobacteria
Rhodovulum sulfidophilum SNK001 [CP015421]
2380532
2380459
-
Gly
CCC
[Ensembl]
¡û
>W1610190083
FBYC01000004
Alphaproteobacteria
Roseibaca calidilacus HL-91 [FBYC]
2075469
2075396
-
Gly
CCC
[ENA]
¡û
>W1610660560
LJSG01000005
Alphaproteobacteria
Roseibaca calidilacus HL-91 [LJSG]
35052
34979
-
Gly
CCC
[ENA]
¡û
>W1610661116
LJSU01000024
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO07 [LJSU]
230957
231030
+
Gly
CCC
[ENA]
¡û
>W1710191699
FBYC01000004
Alphaproteobacteria
Roseibaca calidilacus HL-91 [FBYC]
2075469
2075396
-
Gly
CCC
[ENA]
¡û
>W1710512999
FMZV01000004
Alphaproteobacteria
Ruegeria marina [FMZV]
34607
34680
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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