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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.487572 (55 seq.)
>W1710860652
LMDB01000004
Betaproteobacteria
Duganella sp. Root336D2 [LMDB]
133829
133754
-
Arg
CCG
[ENA]
¡û
>W1710867236
LMIC01000019
Betaproteobacteria
Duganella sp. Root198D2 [LMIC]
62292
62367
+
Arg
CCG
[ENA]
¡û
>W1710867316
LMIE01000003
Betaproteobacteria
Hydrogenophaga sp. Root209 [LMIE]
144817
144742
-
Arg
CCG
[ENA]
¡û
>W1711073549
LSIQ01000541
Betaproteobacteria
Comamonadaceae bacterium CCH12-A10 [LSIQ]
7182
7107
-
Arg
CCG
[ENA]
¡û
>W1711075807
LSKS01000327
Betaproteobacteria
Acidovorax sp. CCH12-A4 [LSKS]
18578
18503
-
Arg
CCG
[ENA]
¡û
>W1711386859
MEFV01000019
Betaproteobacteria
Comamonas sp. SCN 67-35 [MEFV]
31190
31115
-
Arg
CCG
[ENA]
¡û
>W1711394838
MERS01000026
Betaproteobacteria
Burkholderiales bacterium GWE1_65_30 [MERS]
70406
70331
-
Arg
CCG
[ENA]
¡û
>W1711394846
MERT01000010
Betaproteobacteria
Burkholderiales bacterium GWF1_66_17 [MERT]
57515
57440
-
Arg
CCG
[ENA]
¡û
>W1711394921
MESO01000026
Betaproteobacteria
Burkholderiales bacterium RIFOXYC12_FULL_65_23 [MESO]
15791
15866
+
Arg
CCG
[ENA]
¡û
>W1711504553
MKUR01000013
Betaproteobacteria
Burkholderiales bacterium 66-26 [MKUR]
31150
31075
-
Arg
CCG
[ENA]
¡û
>W1711581703
MNUL01000096
Betaproteobacteria
Comamonadaceae bacterium CG1_02_60_18 [MNUL]
14468
14393
-
Arg
CCG
[ENA]
¡û
>W1711583958
MNXW01000155
Betaproteobacteria
Comamonadaceae bacterium CG2_30_57_122 [MNXW]
6546
6621
+
Arg
CCG
[ENA]
¡û
>W1711583970
MNXX01000004
Betaproteobacteria
Comamonadaceae bacterium CG2_30_59_20 [MNXX]
18725
18650
-
Arg
CCG
[ENA]
¡û
>W1711584033
MNXY01000185
Betaproteobacteria
Comamonadaceae bacterium CG2_30_60_41 [MNXY]
7706
7781
+
Arg
CCG
[ENA]
¡û
>W1712049984
NFUU01000003
Betaproteobacteria
Hydrogenophaga sp. IBVHS1 [NFUU]
730834
730909
+
Arg
CCG
[ENA]
¡û
>W1712096725
NIAZ01000036
Betaproteobacteria
Acidovorax sp. T1m [NIAZ]
5933
6008
+
Arg
CCG
[ENA]
¡û
>C171049782
CP016449
Betaproteobacteria
Hydrogenophaga sp. RAC07 [CP016449]
4605280
4605355
+
Arg
CCG
-
¡û
>C171118035
CP021359
Betaproteobacteria
Acidovorax carolinensis NA2 [CP021359]
309061
309136
+
Arg
CCG
-
¡û
>C171118086
CP021361
Betaproteobacteria
Acidovorax carolinensis NA3 [CP021361]
311931
312006
+
Arg
CCG
-
¡û
>C171118163
CP021362
Betaproteobacteria
Acidovorax carolinensis P3 [CP021362]
3749594
3749519
-
Arg
CCG
-
¡û
>C171118189
CP021366
Betaproteobacteria
Acidovorax carolinensis P4 [CP021366]
329705
329780
+
Arg
CCG
-
¡û
>C171120912
CP021648
Betaproteobacteria
Acidovorax sp. T1 [CP021648]
270109
270184
+
Arg
CCG
-
¡û
>W131227137
AUEX01000031
Betaproteobacteria
Acidovorax sp. JHL-9 [AUEX]
28224
28299
+
Arg
CCG
[ENA]
¡û
>W131229581
AUGX01000008
Betaproteobacteria
Ottowia thiooxydans DSM 14619 [AUGX]
7720
7645
-
Arg
CCG
[ENA]
¡û
>WENV180285348
OBID01347450
[OBID] metagenome; sludge
111
186
+
Arg
CCG
[ENA]
¢þ
>WENV180395699
OBPT01085196
[OBPT] marine metagenome; ENVO:00002010 seawater
340
415
+
Arg
CCG
[ENA]
¢þ
>WENV181308093
OFIS01000204
[OFIS] sludge metagenome; sludge
25646
25721
+
Arg
CCG
[ENA]
¢þ
>WENV181401420
OFTX01000143
[OFTX] sludge metagenome; sludge
32385
32310
-
Arg
CCG
[ENA]
¢þ
>WENV181401425
OFTX01000153
[OFTX] sludge metagenome; sludge
22659
22584
-
Arg
CCG
[ENA]
¢þ
>WENV181402189
OFTY01000210
[OFTY] sludge metagenome; sludge
34608
34533
-
Arg
CCG
[ENA]
¢þ
>WENV170019176
BBPD01005343
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
2766
2841
+
Arg
CCG
[ENA]
¢þ
>WENV170019802
BBPE01000660
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
14288
14363
+
Arg
CCG
[ENA]
¢þ
>WENV170639593
JFJP01005291
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
31779
31854
+
Arg
CCG
[ENA]
¢þ
>WENV170706363
LNAP01002423
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1524
1599
+
Arg
CCG
[ENA]
¢þ
>WENV170706582
LNAP01004408
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
6531
6456
-
Arg
CCG
[ENA]
¢þ
>WENV170708599
LNAP01099188
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
334
259
-
Arg
CCG
[ENA]
¢þ
>WENV170712559
LNFM01014879
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
5480
5405
-
Arg
CCG
[ENA]
¢þ
>WENV170713128
LNFM01024389
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
5938
5863
-
Arg
CCG
[ENA]
¢þ
>WENV170713273
LNFM01027736
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
5222
5147
-
Arg
CCG
[ENA]
¢þ
>WENV170714375
LNFM01070158
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1735
1660
-
Arg
CCG
[ENA]
¢þ
>C181158447
CP027666
Betaproteobacteria
Ottowia oryzae KADR8-3 [CP027666]
480680
480605
-
Arg
CCG
-
¡û
>C181158586
CP027669
Betaproteobacteria
Simplicispira suum SC1-8 [CP027669]
1254324
1254249
-
Arg
CCG
-
¡û
>W1910700140
MESF01000197
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_02_FULL_66_35 [MESF]
16481
16556
+
Arg
CCG
[ENA]
¡û
>W1911390933
NWBQ01000056
Betaproteobacteria
Macromonas bipunctata DSM 12705 [NWBQ]
14996
14921
-
Arg
CCG
[ENA]
¡û
>W1810355028
PVLR01000006
Betaproteobacteria
Malikia spinosa 83 [PVLR]
15589
15664
+
Arg
CCG
[ENA]
¡û
>W1810750692
QOZT01000029
Betaproteobacteria
Acidovorax sp. BoFeN1 [QOZT]
11868
11793
-
Arg
CCG
[ENA]
¡û
>C151002096
AP014568
Betaproteobacteria
Serpentinimonas raichei A1 [AP014568]
2128075
2128150
+
Arg
CCG
[Ensembl]
¡û
>W1610070588
BCTJ01000037
Betaproteobacteria
Hydrogenophaga palleronii NBRC 102513 [BCTJ]
33631
33706
+
Arg
CCG
[ENA]
¡û
>W1610722998
LMDB01000004
Betaproteobacteria
Duganella sp. Root336D2 [LMDB]
133829
133754
-
Arg
CCG
[ENA]
¡û
>W1610729582
LMIC01000019
Betaproteobacteria
Duganella sp. Root198D2 [LMIC]
62292
62367
+
Arg
CCG
[ENA]
¡û
>W1610729662
LMIE01000003
Betaproteobacteria
Hydrogenophaga sp. Root209 [LMIE]
144817
144742
-
Arg
CCG
[ENA]
¡û
>W1610912854
LSIQ01000541
Betaproteobacteria
Comamonadaceae bacterium CCH12-A10 [LSIQ]
7182
7107
-
Arg
CCG
[ENA]
¡û
>W1610915112
LSKS01000327
Betaproteobacteria
Acidovorax sp. CCH12-A4 [LSKS]
18578
18503
-
Arg
CCG
[ENA]
¡û
>W1710067961
BCTJ01000037
Betaproteobacteria
Hydrogenophaga palleronii NBRC 102513 [BCTJ]
33631
33706
+
Arg
CCG
[ENA]
¡û
>W1710532529
FNQJ01000021
Betaproteobacteria
Acidovorax soli [FNQJ]
42250
42175
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK