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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.487828 (66 seq.)
>W1711207165
LXFF01000023
Bacillota
Candidatus Arthromitus sp. SFB-turkey [LXFF]
29213
29286
+
Gly
TCC
[ENA]
¡û
>W1711207171
LXFF01000023
Bacillota
Candidatus Arthromitus sp. SFB-turkey [LXFF]
29732
29805
+
Gly
TCC
[ENA]
¡û
>WENV180121456
OASR01005556
[OASR] human gut metagenome; faeces
182
255
+
Gly
TCC
[ENA]
¢þ
>WENV180124226
OASX01004074
[OASX] human gut metagenome; faeces
3822
3749
-
Gly
TCC
[ENA]
¢þ
>WENV180129288
OATC01000262
[OATC] human gut metagenome; faeces
15782
15855
+
Gly
TCC
[ENA]
¢þ
>WENV180129491
OATC01017925
[OATC] human gut metagenome; faeces
75
2
-
Gly
TCC
[ENA]
¢þ
>WENV180140313
OATT01051583
[OATT] human gut metagenome; faeces
8
81
+
Gly
TCC
[ENA]
¢þ
>WENV180171141
OAVV01044517
[OAVV] human gut metagenome; faeces
163
235
+
Gly
TCC
[ENA]
¢þ
>WENV180444503
OBWZ01020559
[OBWZ] human gut metagenome; faeces
74
1
-
Gly
TCC
[ENA]
¢þ
>W141042967
AMEZ01000022
Bacillota
Clostridium celatum DSM 1785 [AMEZ]
69767
69694
-
Gly
TCC
[ENA]
¡û
>W141042968
AMEZ01000022
Bacillota
Clostridium celatum DSM 1785 [AMEZ]
68284
68211
-
Gly
TCC
[ENA]
¡û
>W141042981
AMEZ01000075
Bacillota
Clostridium celatum DSM 1785 [AMEZ]
55019
55092
+
Gly
TCC
[ENA]
¡û
>WENV180504956
OCAO01000317
[OCAO] human gut metagenome; faeces
15878
15951
+
Gly
TCC
[ENA]
¢þ
>WENV180504959
OCAO01000317
[OCAO] human gut metagenome; faeces
16271
16344
+
Gly
TCC
[ENA]
¢þ
>WENV180504966
OCAO01000317
[OCAO] human gut metagenome; faeces
16895
16968
+
Gly
TCC
[ENA]
¢þ
>WENV180506836
OCAS01014369
[OCAS] human gut metagenome; faeces
606
679
+
Gly
TCC
[ENA]
¢þ
>W141063512
APJA01000004
Bacillota
Clostridium intestinale URNW [APJA]
165908
165981
+
Gly
TCC
[ENA]
¡û
>W141063520
APJA01000004
Bacillota
Clostridium intestinale URNW [APJA]
166603
166676
+
Gly
TCC
[ENA]
¡û
>W141063526
APJA01000005
Bacillota
Clostridium intestinale URNW [APJA]
420
493
+
Gly
TCC
[ENA]
¡û
>WENV181811556
OGSY01009315
[OGSY] human gut metagenome; fecal sample 5 from infant 8
464
391
-
Gly
TCC
[ENA]
¢þ
>WENV181821500
OGUE01008662
[OGUE] human gut metagenome; fecal sample 1 from infant 5
138
65
-
Gly
TCC
[ENA]
¢þ
>WENV182601901
OJJJ01001505
[OJJJ] metagenome; faeces
2791
2718
-
Gly
TCC
[ENA]
¢þ
>WENV182601908
OJJJ01001505
[OJJJ] metagenome; faeces
2173
2100
-
Gly
TCC
[ENA]
¢þ
>WENV182613864
OJKA01025591
[OJKA] metagenome; faeces
508
435
-
Gly
TCC
[ENA]
¢þ
>WENV182617458
OJKD01009856
[OJKD] metagenome; faeces
358
431
+
Gly
TCC
[ENA]
¢þ
>WENV182617488
OJKD01016542
[OJKD] metagenome; faeces
102
175
+
Gly
TCC
[ENA]
¢þ
>WENV182823402
OKBT01000486
[OKBT] human gut metagenome; human gut
1105
1178
+
Gly
TCC
[ENA]
¢þ
>WENV182835047
OKFJ01001909
[OKFJ] human gut metagenome; human gut
1260
1187
-
Gly
TCC
[ENA]
¢þ
>WENV182839492
OKHE01001012
[OKHE] human gut metagenome; human gut
1393
1320
-
Gly
TCC
[ENA]
¢þ
>WENV182852615
OKLZ01001030
[OKLZ] human gut metagenome; human gut
1020
947
-
Gly
TCC
[ENA]
¢þ
>WENV182855817
OKNE01002114
[OKNE] human gut metagenome; human gut
894
967
+
Gly
TCC
[ENA]
¢þ
>WENV182865677
OKQK01008356
[OKQK] human gut metagenome; human gut
482
409
-
Gly
TCC
[ENA]
¢þ
>WENV182957765
OKWG01053329
[OKWG] human gut metagenome; human gut
483
410
-
Gly
TCC
[ENA]
¢þ
>WENV182957768
OKWG01053329
[OKWG] human gut metagenome; human gut
81
8
-
Gly
TCC
[ENA]
¢þ
>W1810052485
PDCI01000038
Bacillota
Clostridium neonatale LCDC99A006 [PDCI]
36619
36692
+
Gly
TCC
[ENA]
¡û
>W1810052488
PDCI01000038
Bacillota
Clostridium neonatale LCDC99A006 [PDCI]
37012
37085
+
Gly
TCC
[ENA]
¡û
>W1810052495
PDCI01000038
Bacillota
Clostridium neonatale LCDC99A006 [PDCI]
37636
37709
+
Gly
TCC
[ENA]
¡û
>W1810052501
PDCI01000038
Bacillota
Clostridium neonatale LCDC99A006 [PDCI]
38165
38238
+
Gly
TCC
[ENA]
¡û
>W1810052508
PDCI01000038
Bacillota
Clostridium neonatale LCDC99A006 [PDCI]
56726
56799
+
Gly
TCC
[ENA]
¡û
>W1810052525
PDCJ01000003
Bacillota
Clostridium neonatale LCDC99A005 [PDCJ]
24413
24340
-
Gly
TCC
[ENA]
¡û
>W1810052528
PDCJ01000003
Bacillota
Clostridium neonatale LCDC99A005 [PDCJ]
24020
23947
-
Gly
TCC
[ENA]
¡û
>W1810052535
PDCJ01000003
Bacillota
Clostridium neonatale LCDC99A005 [PDCJ]
23396
23323
-
Gly
TCC
[ENA]
¡û
>W1810052541
PDCJ01000003
Bacillota
Clostridium neonatale LCDC99A005 [PDCJ]
22867
22794
-
Gly
TCC
[ENA]
¡û
>W1810052548
PDCJ01000003
Bacillota
Clostridium neonatale LCDC99A005 [PDCJ]
4306
4233
-
Gly
TCC
[ENA]
¡û
>C151036019
CP008713
Bacillota
Candidatus Arthromitus sp. SFB-mouse-NL [CP008713]
422294
422367
+
Gly
TCC
[Ensembl]
¡û
>C151036025
CP008713
Bacillota
Candidatus Arthromitus sp. SFB-mouse-NL [CP008713]
422804
422877
+
Gly
TCC
[Ensembl]
¡û
>C11101100
AP012202
Bacillota
Candidatus Arthromitus sp. SFB-mouse-Japan [AP012202]
427465
427538
+
Gly
TCC
[Ensembl]
¡û
>C11101106
AP012202
Bacillota
Candidatus Arthromitus sp. SFB-mouse-Japan [AP012202]
427975
428048
+
Gly
TCC
[Ensembl]
¡û
>C11101137
AP012209
Bacillota
Candidatus Arthromitus sp. SFB-mouse-Yit [AP012209]
421808
421881
+
Gly
TCC
[Ensembl]
¡û
>C11101143
AP012209
Bacillota
Candidatus Arthromitus sp. SFB-mouse-Yit [AP012209]
422318
422391
+
Gly
TCC
[Ensembl]
¡û
>W1511350225
JRMA01000061
Bacillota
Clostridium butyricum INCQS635 [JRMA]
5566
5639
+
Gly
TCC
[ENA]
¡û
>W121006910
AFXS01000008
Bacillota
Candidatus Arthromitus sp. SFB-2 [AFXS]
13459
13386
-
Gly
TCC
[ENA]
¡û
>W121006916
AFXS01000008
Bacillota
Candidatus Arthromitus sp. SFB-2 [AFXS]
12949
12876
-
Gly
TCC
[ENA]
¡û
>W121006943
AFXT01000055
Bacillota
Candidatus Arthromitus sp. SFB-3 [AFXT]
1738
1665
-
Gly
TCC
[ENA]
¡û
>W121006949
AFXT01000055
Bacillota
Candidatus Arthromitus sp. SFB-3 [AFXT]
1228
1155
-
Gly
TCC
[ENA]
¡û
>W121006972
AFXU01000139
Bacillota
Candidatus Arthromitus sp. SFB-4 [AFXU]
3451
3378
-
Gly
TCC
[ENA]
¡û
>W121006976
AFXU01000165
Bacillota
Candidatus Arthromitus sp. SFB-4 [AFXU]
1522
1595
+
Gly
TCC
[ENA]
¡û
>W121006987
AFXV01000049
Bacillota
Candidatus Arthromitus sp. SFB-5 [AFXV]
1762
1835
+
Gly
TCC
[ENA]
¡û
>W121007014
AFXW01000089
Bacillota
Candidatus Arthromitus sp. SFB-co [AFXW]
35062
34989
-
Gly
TCC
[ENA]
¡û
>W121007020
AFXW01000089
Bacillota
Candidatus Arthromitus sp. SFB-co [AFXW]
34552
34479
-
Gly
TCC
[ENA]
¡û
>W121021246
AGVP01000007
Bacillota
Candidatus Arthromitus sp. SFB-mouse-SU [AGVP]
112063
112136
+
Gly
TCC
[ENA]
¡û
>W121021252
AGVP01000007
Bacillota
Candidatus Arthromitus sp. SFB-mouse-SU [AGVP]
112573
112646
+
Gly
TCC
[ENA]
¡û
>W1610995195
LXFF01000023
Bacillota
Candidatus Arthromitus sp. SFB-turkey [LXFF]
29213
29286
+
Gly
TCC
[ENA]
¡û
>W1610995201
LXFF01000023
Bacillota
Candidatus Arthromitus sp. SFB-turkey [LXFF]
29732
29805
+
Gly
TCC
[ENA]
¡û
>WENV082792
BAAW01001013
Gut microbiome of Human (healthy human sample F1-U, Infant, Feale)
2512
2585
+
Gly
TCC
[ENA]
>W1710587183
FQXU01000020
Bacillota
Clostridium intestinale DSM 6191 [FQXU]
51910
51983
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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