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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.487903 (20 seq.)
>W131233943
AUKK01000027
Betaproteobacteria
Glomeribacter sp. 1016415 [AUKK]
7665
7738
+
Cys
GCA
[ENA]
¡û
>W1711712075
MTBM01000013
Betaproteobacteria
Neisseria zoodegmatis [MTBM]
44568
44495
-
Cys
GCA
[ENA]
¡û
>WENV182553826
OJCR01036577
[OJCR] seawater metagenome; Sea water
131
58
-
Cys
GCA
[ENA]
¢þ
>WENV182565687
OJEH01026368
[OJEH] seawater metagenome; Sea water
698
771
+
Cys
GCA
[ENA]
¢þ
>WENV182572122
OJFL01000356
[OJFL] seawater metagenome; Sea water
8285
8212
-
Cys
GCA
[ENA]
¢þ
>WENV182579420
OJGS01009239
[OJGS] seawater metagenome; Sea water
1950
1877
-
Cys
GCA
[ENA]
¢þ
>WENV170569980
FLMP01374209
[FLMP] seawater metagenome; seawater
179
252
+
Cys
GCA
[ENA]
¢þ
>WENV170577127
FRDC01003392
[FRDC] freshwater metagenome; water
11346
11273
-
Cys
GCA
[ENA]
¢þ
>C181106447
CP024847
Betaproteobacteria
Aquella oligotrophica DSM 100970 [CP024847]
1184623
1184696
+
Cys
GCA
-
¡û
>C181224099
LT906434
Betaproteobacteria
Neisseria zoodegmatis NCTC12230 [LT906434]
830479
830552
+
Cys
GCA
-
¡û
>C191001080
AP018150
Betaproteobacteria
Mycoavidus cysteinexigens B1-EB [AP018150]
569699
569626
-
Cys
GCA
-
¡û
>C191214495
LR134533
Betaproteobacteria
Neisseria weaveri NCTC12742 [LR134533]
735364
735291
-
Cys
GCA
-
¡û
>W1810227212
POXE01000005
Betaproteobacteria
Neisseria weaveri C2009028987 [POXE]
3334
3407
+
Cys
GCA
[ENA]
¡û
>W1810227244
POXF01000001
Betaproteobacteria
Neisseria weaveri C2009035459 [POXF]
401672
401599
-
Cys
GCA
[ENA]
¡û
>W1810227397
POXI01000001
Betaproteobacteria
Neisseria weaveri C2010015191 [POXI]
447601
447528
-
Cys
GCA
[ENA]
¡û
>W1810228018
POXU01000001
Betaproteobacteria
Neisseria weaveri C2013013825 [POXU]
128395
128468
+
Cys
GCA
[ENA]
¡û
>W1510013084
BBOF01000044
Betaproteobacteria
bacterium endosymbiont of Mortierella elongata FMR23-6 [BBOF]
78459
78532
+
Cys
GCA
[ENA]
¡û
>W11175905
AFWQ01000003
Betaproteobacteria
Neisseria weaveri LMG 5135 [AFWQ]
128168
128241
+
Cys
GCA
[ENA]
¡û
>W11175974
AFWR01000034
Betaproteobacteria
Neisseria weaveri ATCC 51223 [AFWR]
62943
62870
-
Cys
GCA
[ENA]
¡û
>C161109158
LT571436
Betaproteobacteria
Neisseria weaveri NCTC13585 [LT571436]
1447167
1447094
-
Cys
GCA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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