This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.488091 (46 seq.)
>W1710857620
LMAK01000030
Bacteroidota
Formosa algae [LMAK]
53878
53807
-
Cys
GCA
[ENA]
¡û
>W1711206645
LXEI01000001
Bacteroidota
Tamlana agarivorans [LXEI]
793940
794013
+
Cys
GCA
[ENA]
¡û
>W1711360006
MDJD01000049
Bacteroidota
Flavivirga aquatica SK-16 [MDJD]
23945
23872
-
Cys
GCA
[ENA]
¡û
>W1711621498
MPDE01000001
Bacteroidota
Bacteroidetes bacterium MedPE-SWsnd-G2 [MPDE]
476090
476163
+
Cys
GCA
[ENA]
¡û
>W08005618
ABIB01000003
Bacteroidota
Kordia algicida OT-1 [ABIB]
312864
312791
-
Cys
GCA
[ENA]
¡û
>WENV182549727
OJBY01014601
[OJBY] seawater metagenome; Sea water
864
793
-
Cys
GCA
[ENA]
¢þ
>WENV183709219
PDWI01025483
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3598
3669
+
Cys
GCA
[ENA]
¢þ
>WENV183710494
PDWI01047782
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
20
91
+
Cys
GCA
[ENA]
¢þ
>WENV183711668
PDWI01075966
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
981
910
-
Cys
GCA
[ENA]
¢þ
>WENV183712254
PDWI01093607
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
20
91
+
Cys
GCA
[ENA]
¢þ
>WENV183714406
PDWI01182255
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1316
1387
+
Cys
GCA
[ENA]
¢þ
>WENV183715894
PDWI01271570
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
253
324
+
Cys
GCA
[ENA]
¢þ
>WENV183720080
PDWJ01026042
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1537
1608
+
Cys
GCA
[ENA]
¢þ
>WENV183722086
PDWJ01104749
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2297
2368
+
Cys
GCA
[ENA]
¢þ
>WENV170202515
CEPR01051196
[CEPR] marine metagenome genome assembly TARA_039_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
54848
54921
+
Cys
GCA
[ENA]
¢þ
>WENV170298557
CESF01136991
[CESF] marine metagenome genome assembly TARA_093_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
73
2
-
Cys
GCA
[ENA]
¢þ
>WENV170579784
FUFK010040939
[FUFK] metagenome; unknown
17207
17134
-
Cys
GCA
[ENA]
¢þ
>WENV170584720
FUFK010232016
[FUFK] metagenome; unknown
1251
1178
-
Cys
GCA
[ENA]
¢þ
>WENV170588879
FUFK010600131
[FUFK] metagenome; unknown
667
740
+
Cys
GCA
[ENA]
¢þ
>WENV170589601
FUFK010655517
[FUFK] metagenome; unknown
245
172
-
Cys
GCA
[ENA]
¢þ
>WENV170773086
LXNJ01001902
[LXNJ] sponge metagenome; marine sponge reef
6913
6986
+
Cys
GCA
[ENA]
¢þ
>C181063500
CP022378
Bacteroidota
Capnocytophaga cynodegmi G7591 [CP022378]
1235074
1235003
-
Cys
GCA
-
¡û
>C181122719
CP025791
Bacteroidota
Flavivirga eckloniae ECD14 [CP025791]
2964035
2963964
-
Cys
GCA
-
¡û
>C181123908
CP025938
Bacteroidota
Tamlana carrageenivorans UJ94 [CP025938]
1461244
1461315
+
Cys
GCA
-
¡û
>C181196440
CP031153
Bacteroidota
Kordia sp. SMS9 [CP031153]
1242293
1242220
-
Cys
GCA
-
¡û
>W141802278
JPFK01000005
Bacteroidota
Mangrovimonas yunxiaonensis [JPFK]
236552
236625
+
Cys
GCA
[ENA]
¡û
>W1910695568
MDVN01000022
Bacteroidota
Gaetbulibacter sp. 4G1 [MDVN]
719965
719894
-
Cys
GCA
[ENA]
¡û
>W1910758246
MLJY01000001
Bacteroidota
Formosa algae KMM 8021 [MLJY]
331608
331537
-
Cys
GCA
[ENA]
¡û
>W1810385489
PXOQ01000007
Bacteroidota
Aurantibacter aestuarii KCTC 32269 [PXOQ]
461376
461305
-
Cys
GCA
[ENA]
¡û
>W1810504277
QBKT01000006
Bacteroidota
Kordia periserrulae DSM 25731 [QBKT]
165999
166072
+
Cys
GCA
[ENA]
¡û
>W1810588100
QFRI01000001
Bacteroidota
Algibacter marinivivus ZY111 [QFRI]
1063308
1063379
+
Cys
GCA
[ENA]
¡û
>W1810693690
QLLO01000001
Bacteroidota
Olleya aquimaris DSM 24464 [QLLO]
152397
152326
-
Cys
GCA
[ENA]
¡û
>W1511594912
LBMG01000003
Bacteroidota
Kordia jejudonensis SSK3-3 [LBMG]
87213
87140
-
Cys
GCA
[ENA]
¡û
>W1511594962
LBMH01000002
Bacteroidota
Kordia zhangzhouensis MCCC 1A00726 [LBMH]
333664
333591
-
Cys
GCA
[ENA]
¡û
>C161105077
HG315671
Bacteroidota
Formosa agariphila KMM 3901 type strain: KMM 3901 [HG315671]
4196988
4197059
+
Cys
GCA
[Ensembl]
¡û
>W121110486
ALIH01000009
Bacteroidota
Algibacter luteus P7-3-5 [ALIH]
28461
28388
-
Cys
GCA
[ENA]
¡û
>W1610025997
AUYN01000007
Bacteroidota
Wocania ichthyoenteri Th78 [AUYN]
110502
110575
+
Cys
GCA
[ENA]
¡û
>W1610082043
BDEL01000001
Bacteroidota
Formosa haliotis [BDEL]
2706524
2706453
-
Cys
GCA
[ENA]
¡û
>W1610587471
LDKC01000011
Bacteroidota
Tamlana sp. s12 [LDKC]
51262
51189
-
Cys
GCA
[ENA]
¡û
>W1610720001
LMAK01000030
Bacteroidota
Formosa algae [LMAK]
53878
53807
-
Cys
GCA
[ENA]
¡û
>W1610994151
LXEI01000001
Bacteroidota
Tamlana agarivorans [LXEI]
793940
794013
+
Cys
GCA
[ENA]
¡û
>W1710022046
AUYN01000007
Bacteroidota
Wocania ichthyoenteri Th78 [AUYN]
110502
110575
+
Cys
GCA
[ENA]
¡û
>W1710080816
BDEL01000001
Bacteroidota
Formosa haliotis [BDEL]
2706524
2706453
-
Cys
GCA
[ENA]
¡û
>W1710559032
FOMI01000002
Bacteroidota
Algibacter pectinivorans [FOMI]
308903
308976
+
Cys
GCA
[ENA]
¡û
>W1710587332
FQYK01000003
Bacteroidota
Algibacter luteus lutea [FQYK]
210149
210222
+
Cys
GCA
[ENA]
¡û
>W1710706601
LDKC01000011
Bacteroidota
Tamlana sp. s12 [LDKC]
51262
51189
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK