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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.488108 (59 seq.)
>W1710864534
LMFY01000001
Actinomycetota
Microbacterium sp. Root553 [LMFY]
1313582
1313509
-
Gly
CCC
[ENA]
¡û
>W1710868826
LMJK01000001
Actinomycetota
Microbacterium sp. Root280D1 [LMJK]
50934
51007
+
Gly
CCC
[ENA]
¡û
>W1710870049
LMKF01000022
Actinomycetota
Microbacterium sp. Leaf203 [LMKF]
340086
340159
+
Gly
CCC
[ENA]
¡û
>W1710875776
LMOR01000001
Actinomycetota
Microbacterium sp. Leaf151 [LMOR]
423272
423345
+
Gly
CCC
[ENA]
¡û
>W1710875920
LMOU01000001
Actinomycetota
Microbacterium sp. Leaf159 [LMOU]
2739447
2739374
-
Gly
CCC
[ENA]
¡û
>W1710876001
LMOW01000001
Actinomycetota
Microbacterium sp. Leaf161 [LMOW]
1057003
1057076
+
Gly
CCC
[ENA]
¡û
>W1710876497
LMPH01000001
Actinomycetota
Microbacterium sp. Leaf179 [LMPH]
59172
59245
+
Gly
CCC
[ENA]
¡û
>W1710878562
LMRB01000001
Actinomycetota
Microbacterium sp. Leaf436 [LMRB]
551152
551079
-
Gly
CCC
[ENA]
¡û
>W131226578
AUEM01000001
Actinomycetota
Microbacterium sp. URHA0036 [AUEM]
304306
304379
+
Gly
CCC
[ENA]
¡û
>W1711719904
MTIO01000011
Actinomycetota
Microbacterium oleivorans [MTIO]
34178
34251
+
Gly
CCC
[ENA]
¡û
>C171065826
CP017674
Actinomycetota
Microbacterium sp. BH-3-3-3 [CP017674]
2132462
2132389
-
Gly
CCC
-
¡û
>C171073921
CP018151
Actinomycetota
Microbacterium sp. 1.5R [CP018151]
3428209
3428282
+
Gly
CCC
-
¡û
>WENV181385540
OFRI01116175
[OFRI] wastewater metagenome; Exp Tend VB 90WW
430
503
+
Gly
CCC
[ENA]
¢þ
>W141256083
CBVQ010000119
Actinomycetota
Microbacterium sp. C448 [CBVQ]
21964
22037
+
Gly
CCC
[ENA]
¡û
>W141289512
JARE01000071
Actinomycetota
Microbacterium sp. Cr-K20 [JARE]
14625
14552
-
Gly
CCC
[ENA]
¡û
>W141289560
JARF01000044
Actinomycetota
Microbacterium sp. Cr-K1W [JARF]
370767
370694
-
Gly
CCC
[ENA]
¡û
>WENV183727196
PJTO01011744
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
640
567
-
Gly
CCC
[ENA]
¢þ
>WENV183728233
PJTQ01000004
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
629572
629645
+
Gly
CCC
[ENA]
¢þ
>WENV183737153
PJUD01000660
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
4473
4400
-
Gly
CCC
[ENA]
¢þ
>WENV183740564
PJUF01003567
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1438
1511
+
Gly
CCC
[ENA]
¢þ
>C181200434
CP031425
Actinomycetota
Microbacterium foliorum NRRL B-24224 [CP031425]
3364292
3364365
+
Gly
CCC
-
¡û
>C191074814
CP031421
Actinomycetota
Microbacterium oleivorans A9 [CP031421]
2798610
2798683
+
Gly
CCC
-
¡û
>C191092533
CP032630
Actinomycetota
Protaetiibacter intestinalis 2DFWR-13 [CP032630]
1320787
1320716
-
Gly
CCC
-
¡û
>W141532246
JHET01000002
Actinomycetota
Microbacterium sp. CH12i [JHET]
214025
214098
+
Gly
CCC
[ENA]
¡û
>C191185974
CP041040
Actinomycetota
Microbacterium foliorum M2 [CP041040]
3416130
3416203
+
Gly
CCC
-
¡û
>W141565045
JIBF01000010
Actinomycetota
Microbacterium sp. UNC423CL45Tsu [JIBF]
143962
143889
-
Gly
CCC
[ENA]
¡û
>W141817506
JQKT01000008
Actinomycetota
Microbacterium sp. UNCCL10 [JQKT]
249243
249316
+
Gly
CCC
[ENA]
¡û
>W1910211973
FMIR01000014
Actinomycetota
Microbacterium oxydans [FMIR]
234904
234975
+
Gly
CCC
[ENA]
¡û
>W1910377627
FUKO01000004
Actinomycetota
Microbacterium esteraromaticum B Mb 05.01 [FUKO]
5687
5760
+
Gly
CCC
[ENA]
¡û
>W1911075302
NMUM01000044
Actinomycetota
Microbacterium lacus SDZm4 [NMUM]
228176
228103
-
Gly
CCC
[ENA]
¡û
>W1911140323
NOYP01000039
Actinomycetota
Rhodococcus sp. 06-1477-1B [NOYP]
25662
25735
+
Gly
CCC
[ENA]
¡û
>W1911566469
PCOV01000007
Actinomycetota
Microbacterium sp. MYb66 [PCOV]
111199
111126
-
Gly
CCC
[ENA]
¡û
>W1911566519
PCOW01000029
Actinomycetota
Microbacterium sp. MYb64 [PCOW]
14548
14476
-
Gly
CCC
[ENA]
¡û
>W1911566694
PCPA01000002
Actinomycetota
Microbacterium sp. MYb54 [PCPA]
47979
48052
+
Gly
CCC
[ENA]
¡û
>W1911566854
PCPD01000010
Actinomycetota
Microbacterium sp. MYb50 [PCPD]
95261
95188
-
Gly
CCC
[ENA]
¡û
>W1911567110
PCPI01000003
Actinomycetota
Microbacterium sp. MYb43 [PCPI]
48015
48088
+
Gly
CCC
[ENA]
¡û
>W1911567161
PCPJ01000007
Actinomycetota
Microbacterium sp. MYb40 [PCPJ]
95290
95217
-
Gly
CCC
[ENA]
¡û
>W1911567253
PCPL01000007
Actinomycetota
Microbacterium sp. MYb32 [PCPL]
47978
48051
+
Gly
CCC
[ENA]
¡û
>W1810091063
PGGU01000016
Actinomycetota
Microbacterium aurantiacum Sa12 [PGGU]
161058
161129
+
Gly
CCC
[ENA]
¡û
>W1810538474
QDFV01000001
Actinomycetota
Microbacterium sp. TPD7012 [QDFV]
490703
490630
-
Gly
CCC
[ENA]
¡û
>C151093246
CP012299
Actinomycetota
Microbacterium sp. CGR1 [CP012299]
2407401
2407474
+
Gly
CCC
-
¡û
>W1510085876
CDWI01000007
Actinomycetota
Microbacterium sp. 3J1 [CDWI]
256847
256920
+
Gly
CCC
[ENA]
¡û
>W1511313224
JPSY01000001
Actinomycetota
Microbacterium profundi Shh49 [JPSY]
1723473
1723400
-
Gly
CCC
[ENA]
¡û
>W1511432609
JUGQ01000001
Actinomycetota
Microbacterium sp. CF335 [JUGQ]
1021851
1021924
+
Gly
CCC
[ENA]
¡û
>W1511509258
JXQX01000003
Actinomycetota
Microbacterium sp. MEJ108Y [JXQX]
84383
84456
+
Gly
CCC
[ENA]
¡û
>W1511528697
JYIU01000029
Actinomycetota
Microbacterium foliorum DSM 12966 [JYIU]
43378
43305
-
Gly
CCC
[ENA]
¡û
>W1511528781
JYIW01000019
Actinomycetota
Microbacterium oxydans BEL4b [JYIW]
148194
148267
+
Gly
CCC
[ENA]
¡û
>W1610726880
LMFY01000001
Actinomycetota
Microbacterium sp. Root553 [LMFY]
1313582
1313509
-
Gly
CCC
[ENA]
¡û
>W1610731172
LMJK01000001
Actinomycetota
Microbacterium sp. Root280D1 [LMJK]
50934
51007
+
Gly
CCC
[ENA]
¡û
>W1610732395
LMKF01000022
Actinomycetota
Microbacterium sp. Leaf203 [LMKF]
340086
340159
+
Gly
CCC
[ENA]
¡û
>W1610738122
LMOR01000001
Actinomycetota
Microbacterium sp. Leaf151 [LMOR]
423272
423345
+
Gly
CCC
[ENA]
¡û
>W1610738266
LMOU01000001
Actinomycetota
Microbacterium sp. Leaf159 [LMOU]
2739447
2739374
-
Gly
CCC
[ENA]
¡û
>W1610738347
LMOW01000001
Actinomycetota
Microbacterium sp. Leaf161 [LMOW]
1057003
1057076
+
Gly
CCC
[ENA]
¡û
>W1610738843
LMPH01000001
Actinomycetota
Microbacterium sp. Leaf179 [LMPH]
59172
59245
+
Gly
CCC
[ENA]
¡û
>W1610740908
LMRB01000001
Actinomycetota
Microbacterium sp. Leaf436 [LMRB]
551152
551079
-
Gly
CCC
[ENA]
¡û
>W1710525399
FNJN01000002
Actinomycetota
Microbacterium testaceum StLB037 [FNJN]
316629
316556
-
Gly
CCC
[ENA]
¡û
>W1710526749
FNKN01000002
Actinomycetota
Microbacterium sp. cf332 [FNKN]
842291
842218
-
Gly
CCC
[ENA]
¡û
>W1710565121
FOQZ01000002
Actinomycetota
Microbacterium saccharophilum unc380mfsha3.1 [FOQZ]
249053
249126
+
Gly
CCC
[ENA]
¡û
>W1710599991
FTPO01000002
Actinomycetota
Microbacterium sp. RU33B [FTPO]
552372
552445
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK