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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.488160 (56 seq.)
>W1710809668
LKET01000016
Bacillota
Oxobacter pfennigii [LKET]
102465
102538
+
Gly
TCC
[ENA]
¡û
>W1710809674
LKET01000016
Bacillota
Oxobacter pfennigii [LKET]
103117
103190
+
Gly
TCC
[ENA]
¡û
>W131082817
ANZB01000009
Bacillota
Clostridium pasteurianum DSM 525 [ANZB]
153989
154062
+
Gly
TCC
[ENA]
¡û
>W131082825
ANZB01000009
Bacillota
Clostridium pasteurianum DSM 525 [ANZB]
154785
154858
+
Gly
TCC
[ENA]
¡û
>W131082834
ANZB01000009
Bacillota
Clostridium pasteurianum DSM 525 [ANZB]
155662
155735
+
Gly
TCC
[ENA]
¡û
>W131082864
ANZB01000023
Bacillota
Clostridium pasteurianum DSM 525 [ANZB]
8501
8428
-
Gly
TCC
[ENA]
¡û
>C171019440
CP013018
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP013018]
74321
74394
+
Gly
TCC
-
¡û
>C171019446
CP013018
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP013018]
1453997
1454070
+
Gly
TCC
-
¡û
>C171019454
CP013018
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP013018]
1454793
1454866
+
Gly
TCC
-
¡û
>C171019463
CP013018
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP013018]
1455670
1455743
+
Gly
TCC
-
¡û
>C171019519
CP013019
Bacillota
Clostridium pasteurianum M150B [CP013019]
74321
74394
+
Gly
TCC
-
¡û
>C171019525
CP013019
Bacillota
Clostridium pasteurianum M150B [CP013019]
1453032
1453105
+
Gly
TCC
-
¡û
>C171019533
CP013019
Bacillota
Clostridium pasteurianum M150B [CP013019]
1453828
1453901
+
Gly
TCC
-
¡û
>C171019542
CP013019
Bacillota
Clostridium pasteurianum M150B [CP013019]
1454705
1454778
+
Gly
TCC
-
¡û
>WENV180015150
FQKF010367761
[FQKF] soil metagenome; Soil
50
122
+
Gly
TCC
[ENA]
¢þ
>WENV181274091
OFGH01050113
[OFGH] mouse gut metagenome; faeces
164
91
-
Gly
TCC
[ENA]
¢þ
>WENV181281351
OFGO01042277
[OFGO] mouse gut metagenome; faeces
194
121
-
Gly
TCC
[ENA]
¢þ
>WENV181301225
OFHN01063688
[OFHN] mouse gut metagenome; faeces
610
683
+
Gly
TCC
[ENA]
¢þ
>WENV183660278
ORJL010010678
[ORJL] groundwater metagenome; groundwater
3650
3720
+
Gly
TCC
[ENA]
¢þ
>C191089295
CP032416
Bacillota
Clostridium fermenticellae JN500901 [CP032416]
648030
648103
+
Gly
TCC
-
¡û
>C191089302
CP032416
Bacillota
Clostridium fermenticellae JN500901 [CP032416]
648653
648726
+
Gly
TCC
-
¡û
>C191089306
CP032416
Bacillota
Clostridium fermenticellae JN500901 [CP032416]
648998
649071
+
Gly
TCC
-
¡û
>C191089313
CP032416
Bacillota
Clostridium fermenticellae JN500901 [CP032416]
649647
649720
+
Gly
TCC
-
¡û
>C191106437
CP033465
Bacillota
Clostridium sp. JN-1 [CP033465]
2307600
2307527
-
Gly
TCC
-
¡û
>C191184286
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
2944858
2944785
-
Gly
TCC
-
¡û
>C191184294
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
2944188
2944115
-
Gly
TCC
-
¡û
>C191184298
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
2943847
2943774
-
Gly
TCC
-
¡û
>W141803754
JPGY01000001
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
14495
14568
+
Gly
TCC
[ENA]
¡û
>W141803764
JPGY01000007
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
107082
107009
-
Gly
TCC
[ENA]
¡û
>W141803772
JPGY01000007
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
106286
106213
-
Gly
TCC
[ENA]
¡û
>W141803781
JPGY01000007
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
105409
105336
-
Gly
TCC
[ENA]
¡û
>W1910213013
FMJL01000006
Bacillota
Clostridium sp. N3C [FMJL]
24702
24629
-
Gly
TCC
[ENA]
¡û
>W1910213021
FMJL01000006
Bacillota
Clostridium sp. N3C [FMJL]
23957
23887
-
Gly
TCC
[ENA]
¡û
>W1910213025
FMJL01000006
Bacillota
Clostridium sp. N3C [FMJL]
23603
23533
-
Gly
TCC
[ENA]
¡û
>C151047016
CP009267
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009267]
74321
74394
+
Gly
TCC
[Ensembl]
¡û
>C151047022
CP009267
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009267]
1453036
1453109
+
Gly
TCC
[Ensembl]
¡û
>C151047030
CP009267
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009267]
1453832
1453905
+
Gly
TCC
[Ensembl]
¡û
>C151047039
CP009267
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009267]
1454709
1454782
+
Gly
TCC
[Ensembl]
¡û
>C151047095
CP009268
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009268]
74321
74394
+
Gly
TCC
[Ensembl]
¡û
>C151047101
CP009268
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009268]
1453036
1453109
+
Gly
TCC
[Ensembl]
¡û
>C151047109
CP009268
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009268]
1453832
1453905
+
Gly
TCC
[Ensembl]
¡û
>C151047118
CP009268
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009268]
1454709
1454782
+
Gly
TCC
[Ensembl]
¡û
>W121123990
BAEV01000014
Bacillota
Clostridium arbusti SL206 [BAEV]
41211
41138
-
Gly
TCC
[ENA]
¡û
>W121123998
BAEV01000014
Bacillota
Clostridium arbusti SL206 [BAEV]
40490
40417
-
Gly
TCC
[ENA]
¡û
>W121124006
BAEV01000014
Bacillota
Clostridium arbusti SL206 [BAEV]
39791
39718
-
Gly
TCC
[ENA]
¡û
>W121124044
BAEV01000156
Bacillota
Clostridium arbusti SL206 [BAEV]
343
416
+
Gly
TCC
[ENA]
¡û
>C131002497
CP003261
Bacillota
Clostridium pasteurianum BC1 [CP003261]
105863
105936
+
Gly
TCC
[Ensembl]
¡û
>C131002507
CP003261
Bacillota
Clostridium pasteurianum BC1 [CP003261]
1524277
1524350
+
Gly
TCC
[Ensembl]
¡û
>C131002515
CP003261
Bacillota
Clostridium pasteurianum BC1 [CP003261]
1525009
1525082
+
Gly
TCC
[Ensembl]
¡û
>C131002524
CP003261
Bacillota
Clostridium pasteurianum BC1 [CP003261]
1525973
1526046
+
Gly
TCC
[Ensembl]
¡û
>W1610673774
LKET01000016
Bacillota
Oxobacter pfennigii [LKET]
102465
102538
+
Gly
TCC
[ENA]
¡û
>W1610673780
LKET01000016
Bacillota
Oxobacter pfennigii [LKET]
103117
103190
+
Gly
TCC
[ENA]
¡û
>W1710605724
FWXH01000002
Bacillota
Clostridium acidisoli DSM 12555 [FWXH]
1022487
1022414
-
Gly
TCC
[ENA]
¡û
>W1710605732
FWXH01000002
Bacillota
Clostridium acidisoli DSM 12555 [FWXH]
1021706
1021633
-
Gly
TCC
[ENA]
¡û
>W1710605759
FWXH01000020
Bacillota
Clostridium acidisoli DSM 12555 [FWXH]
45389
45462
+
Gly
TCC
[ENA]
¡û
>W1710605789
FWXH01000046
Bacillota
Clostridium acidisoli DSM 12555 [FWXH]
8913
8840
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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