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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.48899 (88 seq.)
>W1710867545
LMIJ01000003
Betaproteobacteria
Acidovorax sp. Root219 [LMIJ]
316587
316674
+
Ser
TGA
[ENA]
¡û
>W1710868485
LMJC01000030
Betaproteobacteria
Acidovorax sp. Root267 [LMJC]
156369
156456
+
Ser
TGA
[ENA]
¡û
>W1710868717
LMJH01000010
Betaproteobacteria
Acidovorax sp. Root275 [LMJH]
160614
160701
+
Ser
TGA
[ENA]
¡û
>W1710872381
LMLY01000012
Betaproteobacteria
Acidovorax sp. Leaf76 [LMLY]
409141
409054
-
Ser
TGA
[ENA]
¡û
>W1710872423
LMLZ01000001
Betaproteobacteria
Acidovorax sp. Leaf78 [LMLZ]
139239
139152
-
Ser
TGA
[ENA]
¡û
>W1710872601
LMMC01000012
Betaproteobacteria
Acidovorax sp. Leaf84 [LMMC]
359787
359700
-
Ser
TGA
[ENA]
¡û
>W1710877003
LMPT01000012
Betaproteobacteria
Acidovorax sp. Leaf191 [LMPT]
432208
432121
-
Ser
TGA
[ENA]
¡û
>W1711073669
LSIU01000668
Betaproteobacteria
Comamonadaceae bacterium CCH4-C5 [LSIU]
11647
11734
+
Ser
TGA
[ENA]
¡û
>W1711125008
LUKZ01000016
Betaproteobacteria
Acidovorax sp. GW101-3H11 [LUKZ]
3486
3573
+
Ser
TGA
[ENA]
¡û
>W1711125021
LUKZ01000033
Betaproteobacteria
Acidovorax sp. GW101-3H11 [LUKZ]
43373
43286
-
Ser
TGA
[ENA]
¡û
>W1711125022
LUKZ01000033
Betaproteobacteria
Acidovorax sp. GW101-3H11 [LUKZ]
27792
27705
-
Ser
TGA
[ENA]
¡û
>W1711384893
MEDM01000231
Betaproteobacteria
Acidovorax sp. SCN 65-28 [MEDM]
10176
10089
-
Ser
TGA
[ENA]
¡û
>W1711394759
MERR01000002
Betaproteobacteria
Burkholderiales bacterium GWA2_64_37 [MERR]
200698
200785
+
Ser
TGA
[ENA]
¡û
>W1711394818
MERS01000010
Betaproteobacteria
Burkholderiales bacterium GWE1_65_30 [MERS]
261377
261464
+
Ser
TGA
[ENA]
¡û
>W1711394862
MERT01000022
Betaproteobacteria
Burkholderiales bacterium GWF1_66_17 [MERT]
261246
261333
+
Ser
TGA
[ENA]
¡û
>W1711501334
MKRM01000163
Betaproteobacteria
Acidovorax sp. 65-7 [MKRM]
1856
1769
-
Ser
TGA
[ENA]
¡û
>W1711503002
MKTF01000039
Betaproteobacteria
Burkholderiales bacterium 64-34 [MKTF]
179991
179904
-
Ser
TGA
[ENA]
¡û
>W1711504305
MKUK01000051
Betaproteobacteria
Alicycliphilus sp. 69-12 [MKUK]
38823
38910
+
Ser
TGA
[ENA]
¡û
>W1711504545
MKUR01000010
Betaproteobacteria
Burkholderiales bacterium 66-26 [MKUR]
130559
130646
+
Ser
TGA
[ENA]
¡û
>W1712049921
NFUT01000001
Betaproteobacteria
Hydrogenophaga sp. IBVHS2 [NFUT]
341816
341729
-
Ser
TGA
[ENA]
¡û
>W1712096730
NIAZ01000067
Betaproteobacteria
Acidovorax sp. T1m [NIAZ]
1578
1665
+
Ser
TGA
[ENA]
¡û
>C171049671
CP016447
Betaproteobacteria
Acidovorax sp. RAC01 [CP016447]
677531
677618
+
Ser
TGA
-
¡û
>C171118110
CP021361
Betaproteobacteria
Acidovorax carolinensis NA3 [CP021361]
3239878
3239965
+
Ser
TGA
-
¡û
>C171118186
CP021362
Betaproteobacteria
Acidovorax carolinensis P3 [CP021362]
841883
841796
-
Ser
TGA
-
¡û
>C171120962
CP021648
Betaproteobacteria
Acidovorax sp. T1 [CP021648]
954028
953941
-
Ser
TGA
-
¡û
>W131227115
AUEX01000009
Betaproteobacteria
Acidovorax sp. JHL-9 [AUEX]
30580
30493
-
Ser
TGA
[ENA]
¡û
>W131239403
BANP01000093
Betaproteobacteria
Acidovorax sp. MR-S7 [BANP]
44604
44691
+
Ser
TGA
[ENA]
¡û
>C000396
CP000539
Betaproteobacteria
Acidovorax sp. JS42 [CP000539]
1158831
1158744
-
Ser
TGA
[Ensembl]
¡û
>WENV180283801
OBID01003270
[OBID] metagenome; sludge
4831
4744
-
Ser
TGA
[ENA]
¢þ
>WENV180284306
OBID01027272
[OBID] metagenome; sludge
389
476
+
Ser
TGA
[ENA]
¢þ
>WENV181172785
OEIV010986140
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
73
160
+
Ser
TGA
[ENA]
¢þ
>WENV181311249
OFJB01000450
[OFJB] sludge metagenome; sludge
1073
1160
+
Ser
TGA
[ENA]
¢þ
>WENV181402660
OFTY01014674
[OFTY] sludge metagenome; sludge
960
1046
+
Ser
TGA
[ENA]
¢þ
>WENV181414312
OGCL01000201
[OGCL] hot springs metagenome; Hot spring water
44573
44486
-
Ser
TGA
[ENA]
¢þ
>WENV181414317
OGCL01000203
[OGCL] hot springs metagenome; Hot spring water
55948
55861
-
Ser
TGA
[ENA]
¢þ
>W141169071
AXVM01000013
Betaproteobacteria
Comamonas badia DSM 17552 [AXVM]
17575
17488
-
Ser
TGA
[ENA]
¡û
>W141278784
JAFU01000001
Betaproteobacteria
Acidovorax sp. JHL-3 [JAFU]
1640043
1639956
-
Ser
TGA
[ENA]
¡û
>WENV183744865
PJUL01000470
[PJUL] feces metagenome; Chicken feces enriched on filter paper
25194
25107
-
Ser
TGA
[ENA]
¢þ
>WENV170654923
JRYL01089915
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
557
644
+
Ser
TGA
[ENA]
¢þ
>WENV170706973
LNAP01010123
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2329
2416
+
Ser
TGA
[ENA]
¢þ
>WENV170707041
LNAP01011321
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
10
97
+
Ser
TGA
[ENA]
¢þ
>WENV170708013
LNAP01044055
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
10
97
+
Ser
TGA
[ENA]
¢þ
>WENV170974497
MTKY01063648
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1512
1425
-
Ser
TGA
[ENA]
¢þ
>C181018990
CP016278
Betaproteobacteria
Diaphorobacter nitroreducens SL-205 [CP016278]
2119630
2119717
+
Ser
TGA
-
¡û
>C181158584
CP027669
Betaproteobacteria
Simplicispira suum SC1-8 [CP027669]
2548174
2548087
-
Ser
TGA
-
¡û
>W09105967
AASD01000029
Betaproteobacteria
Acidovorax sp. JS42 [AASD]
12809
12896
+
Ser
TGA
[ENA]
¡û
>W1910699759
MERV01000017
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_01_FULL_64_960 [MERV]
16432
16519
+
Ser
TGA
[ENA]
¡û
>W1910699801
MERW01000012
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_02_FULL_64_19 [MERW]
25326
25413
+
Ser
TGA
[ENA]
¡û
>W1910699964
MESB01000172
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_65_48 [MESB]
3371
3458
+
Ser
TGA
[ENA]
¡û
>W1910700119
MESF01000045
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_02_FULL_66_35 [MESF]
7649
7736
+
Ser
TGA
[ENA]
¡û
>W1910700290
MESJ01000041
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_64_33 [MESJ]
23770
23857
+
Ser
TGA
[ENA]
¡û
>W1910972099
NKDB02000002
Betaproteobacteria
Alicycliphilus denitrificans BQ1 [NKDB]
294461
294548
+
Ser
TGA
[ENA]
¡û
>W1911114320
NOIG01000004
Betaproteobacteria
Acidovorax kalamii KNDSW-TSA6 [NOIG]
248934
248847
-
Ser
TGA
[ENA]
¡û
>W1911647678
QAJR01000003
Betaproteobacteria
Acidovorax sp. FJL06 [QAJR]
98245
98332
+
Ser
TGA
[ENA]
¡û
>W1911775392
QXNC01000002
Betaproteobacteria
Simplicispira metamorpha NBRC 13960 [QXNC]
151725
151812
+
Ser
TGA
[ENA]
¡û
>SRA1001811
SRR001308.67000
Metagenomic characterization of a wastewater treatment plant (SRP000180)
7
94
+
Ser
TGA
[SRA]
>W1810071611
PEEV01000001
Betaproteobacteria
Acidovorax sp. 56 [PEEV]
5065240
5065153
-
Ser
TGA
[ENA]
¡û
>W1810072507
PEFJ01000001
Betaproteobacteria
Acidovorax sp. 62 [PEFJ]
707954
707867
-
Ser
TGA
[ENA]
¡û
>W1810089231
PGEP01000001
Betaproteobacteria
Acidovorax sp. 69 [PGEP]
3963427
3963514
+
Ser
TGA
[ENA]
¡û
>W1810173351
PJMZ01000001
Betaproteobacteria
Acidovorax sp. 30 [PJMZ]
4411466
4411553
+
Ser
TGA
[ENA]
¡û
>W1810474436
QAIH01000225
Betaproteobacteria
Acidovorax sp. HMWF029 [QAIH]
34744
34831
+
Ser
TGA
[ENA]
¡û
>W1810513831
QBTZ01000001
Betaproteobacteria
Acidovorax sp. 107 [QBTZ]
4317269
4317182
-
Ser
TGA
[ENA]
¡û
>W1810573087
QEKM01000001
Betaproteobacteria
Simplicispira sp. 125 [QEKM]
2159439
2159526
+
Ser
TGA
[ENA]
¡û
>W1810683038
QKVP01000002
Betaproteobacteria
Acidovorax sp. ST3 [QKVP]
634580
634667
+
Ser
TGA
[ENA]
¡û
>W1810696158
QLTA01000095
Betaproteobacteria
Paracidovorax anthurii CFPB 3232 [QLTA]
3728
3815
+
Ser
TGA
[ENA]
¡û
>W1810750682
QOZT01000013
Betaproteobacteria
Acidovorax sp. BoFeN1 [QOZT]
3913
3999
+
Ser
TGA
[ENA]
¡û
>W1810884751
QUMV01000001
Betaproteobacteria
Simplicispira sp. 110 [QUMV]
2503697
2503784
+
Ser
TGA
[ENA]
¡û
>W1511390766
JSYI01000085
Betaproteobacteria
Diaphorobacter sp. J5-51 [JSYI]
39937
39850
-
Ser
TGA
[ENA]
¡û
>W11156548
AFBG01000019
Betaproteobacteria
Acidovorax radicis N35 [AFBG]
155717
155804
+
Ser
TGA
[ENA]
¡û
>W11156578
AFBH01000010
Betaproteobacteria
Acidovorax radicis N35v [AFBH]
593685
593598
-
Ser
TGA
[ENA]
¡û
>WENV051798
AACY022981988
Marine microbial communities from Global Ocean Sampling (GOS)
600
511
-
Ser
TGA
[ENA]
>W121019082
AGTS01000078
Betaproteobacteria
Acidovorax sp. NO-1 [AGTS]
119165
119252
+
Ser
TGA
[ENA]
¡û
>W1610042835
BAZJ01000092
Betaproteobacteria
Diaphorobacter nitroreducens JCM 11421 [BAZJ]
3617
3704
+
Ser
TGA
[ENA]
¡û
>W1610076214
BCYO01000015
Betaproteobacteria
Polaromonas jejuensis NBRC 106434 [BCYO]
7479
7392
-
Ser
TGA
[ENA]
¡û
>C131008697
CP003872
Betaproteobacteria
Acidovorax sp. KKS102 [CP003872]
1099149
1099062
-
Ser
TGA
[Ensembl]
¡û
>W1610729891
LMIJ01000003
Betaproteobacteria
Acidovorax sp. Root219 [LMIJ]
316587
316674
+
Ser
TGA
[ENA]
¡û
>W1610730831
LMJC01000030
Betaproteobacteria
Acidovorax sp. Root267 [LMJC]
156369
156456
+
Ser
TGA
[ENA]
¡û
>W1610731063
LMJH01000010
Betaproteobacteria
Acidovorax sp. Root275 [LMJH]
160614
160701
+
Ser
TGA
[ENA]
¡û
>W1610734727
LMLY01000012
Betaproteobacteria
Acidovorax sp. Leaf76 [LMLY]
409141
409054
-
Ser
TGA
[ENA]
¡û
>W1610734769
LMLZ01000001
Betaproteobacteria
Acidovorax sp. Leaf78 [LMLZ]
139239
139152
-
Ser
TGA
[ENA]
¡û
>W1610734947
LMMC01000012
Betaproteobacteria
Acidovorax sp. Leaf84 [LMMC]
359787
359700
-
Ser
TGA
[ENA]
¡û
>W1610739349
LMPT01000012
Betaproteobacteria
Acidovorax sp. Leaf191 [LMPT]
432208
432121
-
Ser
TGA
[ENA]
¡û
>W1610912974
LSIU01000668
Betaproteobacteria
Comamonadaceae bacterium CCH4-C5 [LSIU]
11647
11734
+
Ser
TGA
[ENA]
¡û
>W1610935941
LUKZ01000016
Betaproteobacteria
Acidovorax sp. GW101-3H11 [LUKZ]
3486
3573
+
Ser
TGA
[ENA]
¡û
>W1610935954
LUKZ01000033
Betaproteobacteria
Acidovorax sp. GW101-3H11 [LUKZ]
43373
43286
-
Ser
TGA
[ENA]
¡û
>W1610935955
LUKZ01000033
Betaproteobacteria
Acidovorax sp. GW101-3H11 [LUKZ]
27792
27705
-
Ser
TGA
[ENA]
¡û
>W1710039995
BAZJ01000092
Betaproteobacteria
Diaphorobacter nitroreducens JCM 11421 [BAZJ]
3617
3704
+
Ser
TGA
[ENA]
¡û
>W1710074029
BCYO01000015
Betaproteobacteria
Polaromonas jejuensis NBRC 106434 [BCYO]
7479
7392
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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