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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.489502 (46 seq.)
>W1710796613
LJSG01000012
Alphaproteobacteria
Roseibaca calidilacus HL-91 [LJSG]
213872
213945
+
Cys
GCA
[ENA]
¡û
>W1711175679
LWEX01000126
Alphaproteobacteria
Sulfitobacter sp. HI0040 HI0040 [LWEX]
7044
7117
+
Cys
GCA
[ENA]
¡û
>W1711177846
LWGH01000489
Alphaproteobacteria
Sulfitobacter sp. HI0129 HI0129 [LWGH]
85
12
-
Cys
GCA
[ENA]
¡û
>W1711229357
LXYJ01000010
Alphaproteobacteria
Jannaschia sp. EhC01 [LXYJ]
22995
22922
-
Cys
GCA
[ENA]
¡û
>C011076
CP000264
Alphaproteobacteria
Jannaschia sp. CCS1 [CP000264]
3310119
3310192
+
Cys
GCA
[Ensembl]
¡û
>C018380
CP000362
Alphaproteobacteria
Roseobacter denitrificans OCh 114 [CP000362]
1775892
1775819
-
Cys
GCA
[Ensembl]
¡û
>WENV181234464
OFEU01000173
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
70176
70103
-
Cys
GCA
[ENA]
¢þ
>WENV181234720
OFEU01002003
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
3391
3318
-
Cys
GCA
[ENA]
¢þ
>W141284742
JAMC01000003
Alphaproteobacteria
Sulfitobacter donghicola DSW-25 = KCTC 12864 = JCM 14565 [JAMC]
35872
35799
-
Cys
GCA
[ENA]
¡û
>W141290248
JASF01000005
Alphaproteobacteria
Sulfitobacter donghicola DSW-25 = KCTC 12864 = JCM 14565 [JASF]
2440919
2440846
-
Cys
GCA
[ENA]
¡û
>WENV183513488
OMKS01005435
[OMKS] sediment metagenome; hot spring sediment
3
76
+
Cys
GCA
[ENA]
¢þ
>WENV183515741
OMKS01089531
[OMKS] sediment metagenome; hot spring sediment
956
1029
+
Cys
GCA
[ENA]
¢þ
>WENV170015784
AZII01009104
[AZII] marine sediment metagenome; enrichment culture of sample MGS-BIZ(AMM) from oil contaminated site at the Bizerte
1175
1102
-
Cys
GCA
[ENA]
¢þ
>WENV170015794
AZII01009781
[AZII] marine sediment metagenome; enrichment culture of sample MGS-BIZ(AMM) from oil contaminated site at the Bizerte
316
243
-
Cys
GCA
[ENA]
¢þ
>ENV08002262
ABPP01011507
microbial mat metagenome; Guerrero Negro Hypersaline Mat 01; altitude 310m AMSL; sample depth 1m below water level, 0-1mm depth into the mat
353
280
-
Cys
GCA
[ENA]
¡û
>ENV08002263
ABPP01011508
microbial mat metagenome; Guerrero Negro Hypersaline Mat 01; altitude 310m AMSL; sample depth 1m below water level, 0-1mm depth into the mat
449
522
+
Cys
GCA
[ENA]
¡û
>WENV170228353
CEQG01003835
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2648
2575
-
Cys
GCA
[ENA]
¢þ
>WENV170228959
CEQG01056832
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
154
81
-
Cys
GCA
[ENA]
¢þ
>WENV170414169
CEUK01178117
[CEUK] marine metagenome genome assembly TARA_125_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2365
2292
-
Cys
GCA
[ENA]
¢þ
>WENV170579253
FUFK010038444
[FUFK] metagenome; unknown
15794
15867
+
Cys
GCA
[ENA]
¢þ
>WENV170583807
FUFK010164174
[FUFK] metagenome; unknown
365
438
+
Cys
GCA
[ENA]
¢þ
>WENV170587098
FUFK010467577
[FUFK] metagenome; unknown
1156
1083
-
Cys
GCA
[ENA]
¢þ
>WENV170962709
MRWF01024495
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
100
173
+
Cys
GCA
[ENA]
¢þ
>WENV170963521
MRWG01000255
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
23707
23780
+
Cys
GCA
[ENA]
¢þ
>C191158470
CP038234
Alphaproteobacteria
Leisingera sp. NJS201 [CP038234]
2585411
2585484
+
Cys
GCA
-
¡û
>C191184404
CP040932
Alphaproteobacteria
Oceanicola sp. D3 [CP040932]
3150117
3150190
+
Cys
GCA
-
¡û
>W1910442632
FWFJ01000027
Alphaproteobacteria
Roseovarius gaetbuli CECT 8370 [FWFJ]
12107
12180
+
Cys
GCA
[ENA]
¡û
>W1910499736
FXYE01000002
Alphaproteobacteria
Actibacterium lipolyticum CECT 8621 [FXYE]
578294
578367
+
Cys
GCA
[ENA]
¡û
>W1910549355
FZPF01000006
Alphaproteobacteria
Jannaschia aquimarina DSM 28248 [FZPF]
179500
179573
+
Cys
GCA
[ENA]
¡û
>W1910814147
MVIQ01000003
Alphaproteobacteria
Sulfitobacter indolifex SAORIC-263 [MVIQ]
382770
382697
-
Cys
GCA
[ENA]
¡û
>W1911081233
NMZM01000008
Alphaproteobacteria
Oceaniglobus indicus 1-19b [NMZM]
125626
125699
+
Cys
GCA
[ENA]
¡û
>W1911237180
NSBT01000037
Alphaproteobacteria
Actibacterium ureilyticum LS-811 [NSBT]
1142982
1143055
+
Cys
GCA
[ENA]
¡û
>W1911638525
PVWS01000007
Alphaproteobacteria
Roseovarius sp. A46 [PVWS]
117981
117908
-
Cys
GCA
[ENA]
¡û
>W1911696551
QMEK01000001
Alphaproteobacteria
Tropicimonas sp. IMCC34043 [QMEK]
1789194
1789121
-
Cys
GCA
[ENA]
¡û
>W1810603234
QGKU01000038
Alphaproteobacteria
Meridianimarinicoccus roseus TG-679 [QGKU]
56876
56803
-
Cys
GCA
[ENA]
¡û
>W1810606061
QGNX01000002
Alphaproteobacteria
Oceanibium sediminis O448 [QGNX]
413645
413718
+
Cys
GCA
[ENA]
¡û
>W1810670803
QJSD01000007
Alphaproteobacteria
Primorskyibacter marinus PX7 [QJSD]
134636
134709
+
Cys
GCA
[ENA]
¡û
>W1511325016
JQFU01000009
Alphaproteobacteria
Rhodovulum sp. NI22 [JQFU]
30647
30720
+
Cys
GCA
[ENA]
¡û
>C161029314
CP010869
Alphaproteobacteria
Actibacterium sp. EMB200-NS6 [CP010869]
2521487
2521560
+
Cys
GCA
[Ensembl]
¡û
>W1610660570
LJSG01000012
Alphaproteobacteria
Roseibaca calidilacus HL-91 [LJSG]
213872
213945
+
Cys
GCA
[ENA]
¡û
>W1610983992
LWEX01000126
Alphaproteobacteria
Sulfitobacter sp. HI0040 HI0040 [LWEX]
7044
7117
+
Cys
GCA
[ENA]
¡û
>W1610986159
LWGH01000489
Alphaproteobacteria
Sulfitobacter sp. HI0129 HI0129 [LWGH]
85
12
-
Cys
GCA
[ENA]
¡û
>W1611013227
LXYJ01000010
Alphaproteobacteria
Jannaschia sp. EhC01 [LXYJ]
22995
22922
-
Cys
GCA
[ENA]
¡û
>W1710543081
FNZQ01000002
Alphaproteobacteria
Jannaschia helgolandensis [FNZQ]
258099
258026
-
Cys
GCA
[ENA]
¡û
>W1710573892
FOXV01000014
Alphaproteobacteria
Roseivivax halotolerans [FOXV]
25356
25429
+
Cys
GCA
[ENA]
¡û
>W1710595095
FSRS01000001
Alphaproteobacteria
Rhodovulum sp. ES.010 [FSRS]
1407311
1407384
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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