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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.49026 (14 seq.)
>C171064531
CP017622
Alphaproteobacteria
Ketogulonicigenium vulgare SPU B805 [CP017622]
1297827
1297916
+
Ser
GGA
-
¡û
>C171101140
CP019937
Alphaproteobacteria
Ketogulonicigenium robustum SPU_B003 [CP019937]
958826
958915
+
Ser
GGA
-
¡û
>WENV170497157
CEVS01146346
[CEVS] marine metagenome genome assembly TARA_151_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
276
187
-
Ser
GGA
[ENA]
¢þ
>WENV171002515
NHNJ01073085
[NHNJ] marine metagenome; surface waters at 20 m depth at the end of the Scripps Institution of Oceanography (SIO) pier
237
148
-
Ser
GGA
[ENA]
¢þ
>C181081672
CP023454
Alphaproteobacteria
Rhodobacteraceae bacterium QY30 [CP023454]
2138891
2138802
-
Ser
GGA
-
¡û
>W1910442745
FWFM01000001
Alphaproteobacteria
Marinovum algicola CECT 5396 [FWFM]
762058
761969
-
Ser
GGA
[ENA]
¡û
>WENV026519
AACY020971818
Marine microbial communities from Global Ocean Sampling (GOS)
264
353
+
Ser
GGA
[ENA]
>C151073518
CP010855
Alphaproteobacteria
Marinovum algicola DG 898 [CP010855]
1892615
1892526
-
Ser
GGA
[Ensembl]
¡û
>C11111799
CP002018
Alphaproteobacteria
Ketogulonicigenium vulgare WSH-001 [CP002018]
752544
752633
+
Ser
GGA
[Ensembl]
¡û
>C11111865
CP002224
Alphaproteobacteria
Ketogulonicigenium vulgare Y25 [CP002224]
1158370
1158459
+
Ser
GGA
[Ensembl]
¡û
>C161047256
CP012908
Alphaproteobacteria
Ketogulonicigenium vulgare Hbe602 [CP012908]
1143764
1143853
+
Ser
GGA
-
¡û
>C161099983
CP016592
Alphaproteobacteria
Ketogulonicigenium vulgare SKV [CP016592]
1143591
1143680
+
Ser
GGA
-
¡û
>W1710542168
FNYY01000003
Alphaproteobacteria
Marinovum algicola [FNYY]
228125
228036
-
Ser
GGA
[ENA]
¡û
>W1710555854
FOJU01000002
Alphaproteobacteria
Poseidonocella pacifica [FOJU]
237064
237153
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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