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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.490292 (34 seq.)
>W131045370
AMRJ01000056
Gammaproteobacteria
Alcanivorax hongdengensis A-11-3 [AMRJ]
5327
5400
+
Gly
TCC
[ENA]
¡û
>W1711029568
LRFG01000009
Gammaproteobacteria
Microbulbifer flavimaris WRN-8 [LRFG]
13656
13729
+
Gly
TCC
[ENA]
¡û
>W131162192
AQYJ01000011
Gammaproteobacteria
Microbulbifer variabilis ATCC 700307 [AQYJ]
9101
9174
+
Gly
TCC
[ENA]
¡û
>W131168377
ARDZ01000006
Gammaproteobacteria
Dasania marina DSM 21967 [ARDZ]
196808
196735
-
Gly
TCC
[ENA]
¡û
>W1711268633
LZDE01000223
Gammaproteobacteria
Microbulbifer mangrovi [LZDE]
9208
9281
+
Gly
TCC
[ENA]
¡û
>W131215017
ATUQ01000011
Gammaproteobacteria
Simiduia agarivorans SA1 = DSM 21679 [ATUQ]
34604
34677
+
Gly
TCC
[ENA]
¡û
>W131230675
AUHU01000020
Gammaproteobacteria
Marinimicrobium agarilyticum DSM 16975 [AUHU]
1602
1529
-
Gly
TCC
[ENA]
¡û
>WENV180102709
OAOZ01006915
[OAOZ] marine metagenome; ENVO:00002010
540
613
+
Gly
TCC
[ENA]
¢þ
>WENV180104964
OAPD01000428
[OAPD] marine metagenome; 2010
3579
3506
-
Gly
TCC
[ENA]
¢þ
>WENV181322331
OFKQ01005753
[OFKQ] marine metagenome; seawater
516
443
-
Gly
TCC
[ENA]
¢þ
>W141152685
AXBZ01000059
Gammaproteobacteria
Alcanivorax sp. P2S70 [AXBZ]
425
352
-
Gly
TCC
[ENA]
¡û
>WENV182559537
OJDQ01000087
[OJDQ] seawater metagenome; Sea water
46634
46707
+
Gly
TCC
[ENA]
¢þ
>WENV183621464
OOFU01001799
[OOFU] marine metagenome; sea ice
929
1002
+
Gly
TCC
[ENA]
¢þ
>WENV183624404
OOGD01006407
[OOGD] marine metagenome; sea ice
775
848
+
Gly
TCC
[ENA]
¢þ
>WENV183624593
OOGD01056548
[OOGD] marine metagenome; sea ice
178
105
-
Gly
TCC
[ENA]
¢þ
>WENV183630794
OOGU01002553
[OOGU] marine metagenome; sea ice
2319
2246
-
Gly
TCC
[ENA]
¢þ
>WENV170237122
CEQM01031871
[CEQM] marine metagenome genome assembly TARA_078_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
325
398
+
Gly
TCC
[ENA]
¢þ
>WENV170341396
CETD01003161
[CETD] marine metagenome genome assembly TARA_110_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
631
558
-
Gly
TCC
[ENA]
¢þ
>WENV170377084
CETU01128685
[CETU] marine metagenome genome assembly TARA_142_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
298
225
-
Gly
TCC
[ENA]
¢þ
>WENV170571225
FLOH01000102
[FLOH] marine metagenome; water
18123
18196
+
Gly
TCC
[ENA]
¢þ
>WENV170622632
FUWD013113186
[FUWD] metagenome; unknown
95
168
+
Gly
TCC
[ENA]
¢þ
>WENV170630846
FUWD013327015
[FUWD] metagenome; unknown
95
168
+
Gly
TCC
[ENA]
¢þ
>WENV170965876
MTEV01008296
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
2318
2391
+
Gly
TCC
[ENA]
¢þ
>C181052475
CP021435
Gammaproteobacteria
Halomonas beimenensis NTU-111 [CP021435]
3661458
3661385
-
Gly
TCC
-
¡û
>C191005887
AP018933
Gammaproteobacteria
Zymobacter palmae IAM14233 [AP018933]
308789
308862
+
Gly
TCC
-
¡û
>C191065630
CP029822
Gammaproteobacteria
Entomomonas moraniae QZS01 [CP029822]
3009039
3009112
+
Gly
TCC
-
¡û
>W141557538
JHVG01000004
Gammaproteobacteria
Zymobacter palmae DSM 10491 [JHVG]
5641
5714
+
Gly
TCC
[ENA]
¡û
>W1910001356
AQOQ01000063
Gammaproteobacteria
Alcanivorax sp. MD8A [AQOQ]
375
302
-
Gly
TCC
[ENA]
¡û
>W1810177463
PJRN01000024
Gammaproteobacteria
Halomonas saliphila LCB169 [PJRN]
40636
40563
-
Gly
TCC
[ENA]
¡û
>W1810624143
QHGY01000003
Gammaproteobacteria
Halomonas lactosivorans KCTC 52281 [QHGY]
2471
2544
+
Gly
TCC
[ENA]
¡û
>C151013105
CP006829
Gammaproteobacteria
Thalassolituus oleivorans R6-15 [CP006829]
3498829
3498756
-
Gly
TCC
[Ensembl]
¡û
>W121123931
BAEU01000045
Gammaproteobacteria
Halomonas sp. KM-1 [BAEU]
2141
2214
+
Gly
TCC
[ENA]
¡û
>C131006080
CP003746
Gammaproteobacteria
Simiduia agarivorans SA1 = DSM 21679 [CP003746]
2036532
2036459
-
Gly
TCC
[Ensembl]
¡û
>W1610877836
LRFG01000009
Gammaproteobacteria
Microbulbifer flavimaris WRN-8 [LRFG]
13656
13729
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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