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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.490298 (13 seq.)
>C007434
CP000240
Cyanobacteriota
Synechococcus sp. JA-2-3B'a[2-13] [CP000240]
2987465
2987390
-
Trp
CCA
[Ensembl]
¡û
>C025514
BA000039
Cyanobacteriota
Thermosynechococcus vestitus BP-1 [BA000039]
1354396
1354468
+
Trp
CCA
[Ensembl]
¡û
>WENV180012773
FMSI01019452
[FMSI] soil metagenome; Soil
27474
27548
+
Trp
CCA
[ENA]
¢þ
>WENV181412107
OGCI01082794
[OGCI] hot springs metagenome; Hot spring water
164
90
-
Trp
CCA
[ENA]
¢þ
>WENV181414326
OGCL01000212
[OGCL] hot springs metagenome; Hot spring water
65820
65746
-
Trp
CCA
[ENA]
¢þ
>WENV170000773
AFSR01004108
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
16145
16220
+
Trp
CCA
[ENA]
¢þ
>WENV170000944
AFSR01008783
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
811
735
-
Trp
CCA
[ENA]
¢þ
>C181030468
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
1366622
1366696
+
Trp
CCA
-
¡û
>C191001224
AP018202
Cyanobacteriota
Thermostichus vulcanus NIES-2134 [AP018202]
1268985
1268911
-
Trp
CCA
-
¡û
>C191085226
CP032152
Cyanobacteriota
Thermosynechococcus vestitus E542 [CP032152]
2462302
2462228
-
Trp
CCA
-
¡û
>C141007953
CP006735
Cyanobacteriota
Thermosynechococcus sp. NK55a [CP006735]
687096
687022
-
Trp
CCA
-
¡û
>WENV11101116
AFSR01004108
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
16145
16220
+
Trp
CCA
[ENA]
¡û
>WENV11101287
AFSR01008783
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
811
735
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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