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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.490422 (23 seq.)
>WENV180024801
FTIJ01033732
[FTIJ] metagenome; soil
320
395
+
Ala
TGC
[ENA]
¢þ
>WENV180025801
FTIQ01113378
[FTIQ] metagenome; soil
87
162
+
Ala
TGC
[ENA]
¢þ
>WENV180027150
FTIW01379267
[FTIW] metagenome; soil
130
55
-
Ala
TGC
[ENA]
¢þ
>WENV180027815
FTIZ01115560
[FTIZ] metagenome; soil
467
542
+
Ala
TGC
[ENA]
¢þ
>WENV180027911
FTIZ01248736
[FTIZ] metagenome; soil
641
566
-
Ala
TGC
[ENA]
¢þ
>WENV180029180
FTJI01122509
[FTJI] metagenome; soil
627
552
-
Ala
TGC
[ENA]
¢þ
>WENV180034690
FTKR01105416
[FTKR] metagenome; soil
627
552
-
Ala
TGC
[ENA]
¢þ
>WENV181227873
OFDN01065258
[OFDN] hot springs metagenome; Water
819
744
-
Ala
TGC
[ENA]
¢þ
>W141136752
AWGC01000075
Alphaproteobacteria
Asticcacaulis sp. AC402 [AWGC]
29
104
+
Ala
TGC
[ENA]
¡û
>W141136753
AWGC01000076
Alphaproteobacteria
Asticcacaulis sp. AC402 [AWGC]
29
104
+
Ala
TGC
[ENA]
¡û
>W141136891
AWGF01000025
Alphaproteobacteria
Asticcacaulis sp. YBE204 [AWGF]
159
234
+
Ala
TGC
[ENA]
¡û
>W141136893
AWGF01000040
Alphaproteobacteria
Asticcacaulis sp. YBE204 [AWGF]
154
229
+
Ala
TGC
[ENA]
¡û
>WENV183697277
OUNJ010244662
[OUNJ] metagenome; soil
1088
1013
-
Ala
TGC
[ENA]
¢þ
>WENV183697326
OUNJ010376147
[OUNJ] metagenome; soil
543
468
-
Ala
TGC
[ENA]
¢þ
>C191005625
AP018827
Alphaproteobacteria
Asticcacaulis excentricus M6 [AP018827, AP018828]
1590038
1589963
-
Ala
TGC
-
¡û
>C191005638
AP018828
Alphaproteobacteria
Asticcacaulis excentricus M6 [AP018827, AP018828]
157298
157373
+
Ala
TGC
-
¡û
>C191005641
AP018828
Alphaproteobacteria
Asticcacaulis excentricus M6 [AP018827, AP018828]
338831
338906
+
Ala
TGC
-
¡û
>W09133892
ACQR01000078
Alphaproteobacteria
Asticcacaulis excentricus CB 48 [ACQR]
2014
2089
+
Ala
TGC
[ENA]
¡û
>W1810503527
QBKE01000011
Alphaproteobacteria
Asticcacaulis sp. CF398 [QBKE]
3405
3330
-
Ala
TGC
[ENA]
¡û
>C11100669
CP002395
Alphaproteobacteria
Asticcacaulis excentricus CB 48 [CP002395, CP002396]
554896
554971
+
Ala
TGC
[Ensembl]
¡û
>C11100691
CP002396
Alphaproteobacteria
Asticcacaulis excentricus CB 48 [CP002395, CP002396]
151692
151767
+
Ala
TGC
[Ensembl]
¡û
>C11100701
CP002396
Alphaproteobacteria
Asticcacaulis excentricus CB 48 [CP002395, CP002396]
1073733
1073658
-
Ala
TGC
[Ensembl]
¡û
>W11123403
ADUH01000274
Alphaproteobacteria
Asticcacaulis biprosthecium C19 [ADUH]
1847
1922
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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