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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.490454 (35 seq.)
>W1711228287
LXWK01000016
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
446198
446123
-
Glu
TTC
[ENA]
¡û
>W1711228288
LXWK01000016
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
446092
446017
-
Glu
TTC
[ENA]
¡û
>W1711228289
LXWK01000016
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
445990
445915
-
Glu
TTC
[ENA]
¡û
>W1711228290
LXWK01000016
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
445892
445817
-
Glu
TTC
[ENA]
¡û
>W131034042
AJGP01000015
Gammaproteobacteria
Isoalcanivorax pacificus W11-5 [AJGP]
70034
69959
-
Glu
TTC
[ENA]
¡û
>WENV170658524
JTFP01132948
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
129
204
+
Glu
TTC
[ENA]
¢þ
>C191129106
CP034683
Gammaproteobacteria
Rheinheimera mangrovi LHK132 [CP034683]
2738415
2738340
-
Glu
TTC
-
¡û
>C191129107
CP034683
Gammaproteobacteria
Rheinheimera mangrovi LHK132 [CP034683]
2738313
2738238
-
Glu
TTC
-
¡û
>C191129108
CP034683
Gammaproteobacteria
Rheinheimera mangrovi LHK132 [CP034683]
2738203
2738128
-
Glu
TTC
-
¡û
>C191129109
CP034683
Gammaproteobacteria
Rheinheimera mangrovi LHK132 [CP034683]
2738103
2738028
-
Glu
TTC
-
¡û
>W141779402
JONU01000007
Gammaproteobacteria
Rheinheimera texasensis DSM 17496 [JONU]
621654
621579
-
Glu
TTC
[ENA]
¡û
>W141779403
JONU01000007
Gammaproteobacteria
Rheinheimera texasensis DSM 17496 [JONU]
621554
621479
-
Glu
TTC
[ENA]
¡û
>W141779404
JONU01000007
Gammaproteobacteria
Rheinheimera texasensis DSM 17496 [JONU]
621453
621378
-
Glu
TTC
[ENA]
¡û
>C151006527
CP004387
Gammaproteobacteria
Isoalcanivorax pacificus W11-5 [CP004387]
1464038
1464113
+
Glu
TTC
[Ensembl]
¡û
>W1511573484
LAMX01000020
Gammaproteobacteria
Rheinheimera sp. KL1 [LAMX]
41180
41105
-
Glu
TTC
[ENA]
¡û
>W1511584726
LAVS01000086
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
273888
273963
+
Glu
TTC
[ENA]
¡û
>W1511584727
LAVS01000086
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
273990
274065
+
Glu
TTC
[ENA]
¡û
>W1511584728
LAVS01000086
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
274100
274175
+
Glu
TTC
[ENA]
¡û
>W1511584729
LAVS01000086
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
274200
274275
+
Glu
TTC
[ENA]
¡û
>W11162849
AFHI01000007
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
74148
74073
-
Glu
TTC
[ENA]
¡û
>W11162850
AFHI01000007
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
74046
73971
-
Glu
TTC
[ENA]
¡û
>W11162851
AFHI01000007
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
73936
73861
-
Glu
TTC
[ENA]
¡û
>W11162852
AFHI01000007
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
73836
73761
-
Glu
TTC
[ENA]
¡û
>C161058499
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
2926628
2926703
+
Glu
TTC
-
¡û
>C161058500
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
2926733
2926808
+
Glu
TTC
-
¡û
>C161058501
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
2926833
2926908
+
Glu
TTC
-
¡û
>C161058502
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
2926934
2927009
+
Glu
TTC
-
¡û
>C161058540
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
878025
877950
-
Glu
TTC
-
¡û
>C161058541
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
877920
877845
-
Glu
TTC
-
¡û
>C161058542
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
877820
877745
-
Glu
TTC
-
¡û
>C161058543
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
877719
877644
-
Glu
TTC
-
¡û
>W1611012204
LXWK01000016
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
446198
446123
-
Glu
TTC
[ENA]
¡û
>W1611012205
LXWK01000016
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
446092
446017
-
Glu
TTC
[ENA]
¡û
>W1611012206
LXWK01000016
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
445990
445915
-
Glu
TTC
[ENA]
¡û
>W1611012207
LXWK01000016
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
445892
445817
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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