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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.490455 (10 seq.)
>W1711409426
MGOR01000025
Gammaproteobacteria
Chromatiales bacterium RIFOXYA1_FULL_46_5 [MGOR]
19
94
+
Val
TAC
[ENA]
¡û
>W1711409441
MGOR01000946
Gammaproteobacteria
Chromatiales bacterium RIFOXYA1_FULL_46_5 [MGOR]
110
35
-
Val
TAC
[ENA]
¡û
>WENV012777
AACY020348840
Marine microbial communities from Global Ocean Sampling (GOS)
255
330
+
Val
TAC
[ENA]
>WENV181385149
OFRI01041581
[OFRI] wastewater metagenome; Exp Tend VB 90WW
218
143
-
Val
TAC
[ENA]
¢þ
>C191129124
CP034683
Gammaproteobacteria
Rheinheimera mangrovi LHK132 [CP034683]
1395620
1395545
-
Val
TAC
-
¡û
>W11162860
AFHI01000012
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
357861
357936
+
Val
TAC
[ENA]
¡û
>C161058478
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
89996
90071
+
Val
TAC
-
¡û
>C161058479
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
90096
90171
+
Val
TAC
-
¡û
>C161058480
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
90194
90269
+
Val
TAC
-
¡û
>C161058481
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
90290
90365
+
Val
TAC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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